Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq16715 95.1 1e-14 seq32996 93.3 4e-14 >seq16715 Length=90750 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || || ||||| ||||| Sbjct 55228 CCACCACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCG 55287 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||||||||| |||||| ||||||| | |||||||| || || Sbjct 55288 AGGGTCCGACCATCTTCGAGCTGTTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGGGGA 55347 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || ||| | | || | ||||| | |||||| Sbjct 55348 ATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTGTCAATGGTGTCTGAACTTTCCACC 55407 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || | ||||| ||||| || ||||| Sbjct 55408 TCAAGGGTGATGGTCTTTCCTGTGAGGGTTTTCACGAAGATCTGCAT 55454 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||||| || ||||| || || ||||| ||||| Sbjct 65781 CCACCACGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 65840 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || ||||| || || ||| |||||| | ||||| || || || Sbjct 65841 AGGGTCCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 65900 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||| | ||| | | || | ||||| | ||||| Sbjct 65901 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTGTCAATGGTGTCAGAACTTTCCAC 65959 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||| | |||||||| ||||| || || || || |||||||| Sbjct 65960 CTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 66007 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||||||||||||||| ||||| Sbjct 66465 CCACCACGAAGACGGAGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCAGCG 66524 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| || || || || ||| ||||||| | |||||| || || || Sbjct 66525 AGGGTCCGGCCGTCTTCAAGTTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGG 66584 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || || | | || | ||||| | | |||||| Sbjct 66585 ATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATGGTGTCTGAGCTTTCCACC 66644 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || || | ||||| || || || ||||| Sbjct 66645 TCGAGGGTGATTGTCTTTCCAGTGAGGGTTTTGACAAAGATCTGCAT 66691 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || ||||| || |||||| Sbjct 66693 CCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGAATATTGTAATCGGCT 66752 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| ||||| || || ||| ||||||| | ||||| || || ||| Sbjct 66753 AGAGTACGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCCGGGGGT 66812 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||| ||||| ||| || ||| | | || | ||||| | | |||||| Sbjct 66813 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATGGTGTCTGAGCTTTCCACC 66872 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| ||| | ||||| || || | ||||| || || || ||||| Sbjct 66873 TCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTGACAAAGATCTGCAT 66919 >seq32996 Length=3898 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||||||||| || ||||| ||||| | ||| | ||||| |||||||| ||| Sbjct 2032 GTAGACTCTTTCTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCA 2091 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| ||||||| | |||||||| ||||| |||||||| ||||| ||| | || | ||| Sbjct 2092 GCAAAGATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTC-TTGAATCTTAGCTTT 2150 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | ||| ||||||| || | ||||| ||||| | || Sbjct 2151 GACATTATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGT 2210 Query 139747 TTTTACGAATATTTGCAT 139764 || || || || ||||| Sbjct 2211 CTTAACAAAGATCTGCAT 2228 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || || || | || ||||| || || |||||||| || | || ||| Sbjct 871 AAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAGTCCTC 930 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||| || || |||||||||||| |||||| || ||||| || || || || || || Sbjct 931 CCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATACCCTCC 990 Query 139667 TTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 ||||| ||| | |||| ||| | | || | || || | ||| ||||| | || Sbjct 991 TTGTC-TTGAATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCAATGT 1049 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | ||||| || ||||| || || || || |||||||| Sbjct 1050 AATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1088 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 139542 CTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTG 139601 ||| ||||||||| || || || | || ||||| || || |||||||| || | | Sbjct 661 CTCTTAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAG 720 Query 139602 TGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGC 139661 | ||| ||| || || |||||||||||| |||||| ||| ||||| || || || || | Sbjct 721 TCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGCTCTGGGGGAATAC 780 Query 139662 CTTCTTTGTCGGTGATTTTTTGTTTT 139687 | || ||||| ||| | |||| ||| Sbjct 781 CCTCCTTGTC-TTGAATCTTTGCTTT 805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495669232268800