Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq43689 95.1 9e-15 seq24164 86.0 5e-12 seq16715 84.2 2e-11 seq6347 82.4 6e-11 >seq43689 Length=21515 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | ||||||||||| || |||||| || | |||||||| | Sbjct 1520 CCTCCACGTAGACGGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGCT 1461 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | |||||| |||| ||||| || || ||||| || || | | || ||||| | || Sbjct 1460 AGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGGA 1401 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | || || || | | ||| || | || || Sbjct 1400 ATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATTGTATCAGAACTTTCCACC 1341 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| || ||||| |||||||| |||||||||||||| || ||||| Sbjct 1340 TCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 1294 >seq24164 Length=196930 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 42931 TTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGT 42990 |||||||| | | |||||| | || || | || || ||||| || ||||||||||| Sbjct 29733 TTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGC 29674 Query 42991 TGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCG 43050 || || | || | |||||| || || ||| ||||||| || ||| |||||| Sbjct 29673 TGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGTCAATAGTGTCG 29614 Query 43051 CCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 | | || || || | ||| || || || || || ||||||||||| || || |||||| Sbjct 29613 CTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGAAGATCTGCATT 29554 Query 43111 TT 43112 || Sbjct 29553 TT 29552 >seq16715 Length=90750 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| | || || ||||| | ||| | || ||||| || | ||||||||||| Sbjct 65553 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCT 65612 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 ||||| | | | || ||||| || ||||| ||||||||||| | || ||||| | || Sbjct 65613 AATGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGATCTGGTGGG 65672 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||| ||||| || ||| ||| | || || || ||| |||||| ||| || | Sbjct 65673 ATACCCTCTTTGTC-CTGAATCTTTGCCTTAACGTTGTCAATGGTGTCG-GAGCTTTCCA 65730 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || ||||| || || || | || ||||| || |||||||| Sbjct 65731 CCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACGAAGATTTGCAT 65779 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||| |||| ||| |||||| || | ||||||||||| Sbjct 66693 CCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGAATATTGTAATCGGCT 66752 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| |||| || | || ||||| ||||| |||| | ||| || || | || Sbjct 66753 AGAGTACGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCCGGGGGT 66812 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | ||||| || || |||| |||| || || ||| ||||| ||| || || Sbjct 66813 ATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTTGTCAATGGTGTC-TGAGCTTTCCAC 66871 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || ||||| ||||| || || ||||| ||||| || ||||| Sbjct 66872 CTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTGACAAAGATCTGCAT 66919 Score = 82.4 bits (90), Expect = 6e-11 Identities = 136/194 (70%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 |||||| || | |||||||| | | || ||| |||| || | || || |||||||| Sbjct 66044 CTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGTCCGTCCTCAAGCTGCTTTCCGGCAAA 66103 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 ||||||| || || || | || | ||||| || || |||| |||| || | Sbjct 66104 GATCAATCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTGGCTTTAACGTT 66163 Query 43038 GCCAACTGTGTCGCCAGCCT-CGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCA 43096 | ||| |||||| ||| | | || || | || || || |||||||| ||||| |||| Sbjct 66164 GTCAATAGTGTCGG-AGCTTTCAACCTCAAGGGTGATGGTCTTTCCGGTCAGAGTCTTCA 66222 Query 43097 CAAAAATTTGCATT 43110 | |||||||||||| Sbjct 66223 CGAAAATTTGCATT 66236 >seq6347 Length=16439 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42882 GCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGA 42941 ||| |||||||| | | || | |||| ||| ||||||||| | ||||| || | Sbjct 13244 GCCACCACGCAGACGAAGGACAAGGTGGAGTGTGGACTCCTTTTGTATGTTGTAGTCAGC 13303 Query 42942 CAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGG 43001 | || | | | || ||||| ||||| |||||||| ||||||| ||| ||||| | || Sbjct 13304 TAGAGTTCTTCCATCCTCCAACTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGG 13363 Query 43002 CACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | ||||| || || ||| | ||||| || ||| ||||| ||| ||| | Sbjct 13364 AATTCCTTCCTTGTCTTGGATTTTTGCCTTGACATTGTCAATAGTGTCAG-AGCTCTCAA 13422 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || || || ||||| | ||||||||||| || ||||| Sbjct 13423 CCTCAAGAGTAATTGTCTTCCCGGTCAAGGTTTTCACAAAGATCTGCAT 13471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381073693420512