Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6171 192 8e-44 seq11918 86.0 8e-12 >seq6171 Length=36435 Score = 192 bits (212), Expect = 8e-44 Identities = 583/894 (65%), Gaps = 20/894 (2%) Strand=Plus/Minus Query 41774 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTT 41833 || || || || || || | || || || ||||||||||| |||| | || Sbjct 5256 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAGC 5197 Query 41834 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 41893 ||||| ||||||| ||||| | |||| || || || | | | ||||| || | | Sbjct 5196 TCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAAC 5137 Query 41894 AATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 41953 |||||||| |||| |||||||| ||| | |||||| || | |||||| || | || Sbjct 5136 AATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCAGA 5077 Query 41954 TTAACTGGAAGAGC--CACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | |||||||| |||| | ||| | | | ||| || || || |||| |||| Sbjct 5076 GCACAAGGAAGAGCATCACAC-ACGAACTCCCT-TTCTATCTCCACAGCATCTGCAATAA 5019 Query 42012 TAGATCTTACTGTTTCTTCA-----CTCGGTGGATACAATAAATGTTTAAACATCAAACA 42066 | || ||| || ||| || || || | || ||| | | |||||| Sbjct 5018 TTCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTGT----AAAGCAAACA 4964 Query 42067 TGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCC 42126 || ||||| ||||||| ||| || ||||| |||||| || || || || || | ||| Sbjct 4963 CGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCC 4904 Query 42127 GGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGAT 42186 ||||||| || || ||||| | ||||||||| || || ||| ||||| || Sbjct 4903 AGGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAAT 4844 Query 42187 TCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATGTAT 42243 ||||| || ||||| || | | | ||| | || ||| || ||| || Sbjct 4843 CCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAAC---CATCGAT 4787 Query 42244 CCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAA 42303 ||| | ||||| | |||||||||| |||||||| || || || || ||| || Sbjct 4786 CCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAA 4727 Query 42304 GAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTC 42363 | | | | ||||| | | ||| || | || | || | || | ||| ||||| || Sbjct 4726 CAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTC 4667 Query 42364 TGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTG 42423 ||||| || || |||||||| || || || || |||||| | ||||| | |||||| Sbjct 4666 GGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTG 4607 Query 42424 TACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAA 42483 || ||| | || | | | || | || || || || ||||| ||| ||||| Sbjct 4606 GACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAA 4547 Query 42484 AAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATT 42543 ||| || | ||||| | || |||| | |||| | | ||||| || | ||| | | Sbjct 4546 AAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACG 4487 Query 42544 GATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATA 42603 |||| ||||| ||| ||||||||||||||||| || ||||| || || || || Sbjct 4486 ATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTA 4427 Query 42604 CATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATT 42657 ||| | ||| || | |||| ||||||||||| ||| |||| || ||| || Sbjct 4426 CATTTCCCAAATCTGTGGATACTGAATTGGGAACATACAGAATCGATCTGGGTT 4373 >seq11918 Length=25867 Score = 86.0 bits (94), Expect = 8e-12 Identities = 152/222 (68%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | ||||| || || | |||| | || | || ||| |||| ||| ||| Sbjct 16174 CCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCCA 16233 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || |||| || || || || ||||| || ||| | ||||| || ||| | ||| Sbjct 16234 TTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGAT 16293 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || |||||||| || ||| || | || ||| || | |||||||| ||| Sbjct 16294 ACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGAGTATCATATATG 16353 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 72399 ||||| ||||||||||| ||||| | || || |||||| Sbjct 16354 CCCTCAATACTATCATCTTTCATGCATATCAGGAAGCAGCTA 16395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670605107424640