Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq32996 95.1 1e-14 seq25243 89.7 5e-13 seq6347 86.0 6e-12 >seq32996 Length=3898 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||| ||| | || | ||| | ||||| ||||| || ||||||||||| Sbjct 2002 CCACCACGTAGACGGAGGACAAGATGGAGGGTAGACTCTTTCTGGATGTTGTAATCAGCA 2061 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| | ||||| || ||||| |||||| ||||||| | |||||||| ||||| Sbjct 2062 AGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAGATCAGCCTCTGCTGATCTGGAGGA 2121 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| ||| || ||| | | || | ||||| | || || Sbjct 2122 ATGCCTTCCTTGTCTTGAATCTTAGCTTTGACATTATCAATGGTGTCAGAACTCTCGACC 2181 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| ||| | ||||| ||||| | ||| || || || || ||||| Sbjct 2182 TCAAGAGTGATGGTCTTTCCGGTGAGTGTCTTAACAAAGATCTGCAT 2228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || || || ||||| ||||||||||| | ||| | ||||| || ||| Sbjct 1798 TGAAGGGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGT 1857 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| ||||||| | ||||| || || || || ||||| ||||| |||||| Sbjct 1858 TTCCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCTTGAATTTTA 1917 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 ||| | | || | ||||| | | || || |||| ||| | ||||| |||||| Sbjct 1918 GCTTTGACATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTC 1977 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| || || |||||||| Sbjct 1978 AGAGTTTTAACAAAGATTTGCAT 2000 Score = 84.2 bits (92), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 142959 CTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCA 143018 || ||| ||||||||| || ||||| | || || || || || ||||| || || | Sbjct 658 CTNCTCTTAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAA 717 Query 143019 TTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTA 143078 || ||| ||| || ||||||||||||||| |||||| ||| ||||| || || || | Sbjct 718 GAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGCTCTGGGGGAA 777 Query 143079 TGCCTTCTTTGTC 143091 | || || ||||| Sbjct 778 TACCCTCCTTGTC 790 >seq25243 Length=7086 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/129 (77%), Gaps = 6/129 (5%) Strand=Plus/Minus Query 142972 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG-- 143029 || ||| | ||||| || |||||||| || ||||||||||| || || |||| Sbjct 5389 CAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCCAGGGT--TCGACCA 5332 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| | |||||| |||||| | ||||| | |||||||| ||||||||||||||||| Sbjct 5331 TCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGTATGCCTTCTTTA 5272 Query 143090 TC--GGTAA 143096 || ||||| Sbjct 5271 TCCTGGTAA 5263 >seq6347 Length=16439 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 142987 TGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTTGTTTAC 143045 ||| || || |||||||||||||| || ||| | || || || || | ||||||| Sbjct 13274 TGTGGACTCCTTTTGTATGTTGTAGTCAGCT-AGAGTTCTTCCATCCTCCAACTGTTTAC 13332 Query 143046 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTT 143105 | ||| |||||| | |||||||| ||||| || ||||| ||||| |||||| | Sbjct 13333 CGGCAAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTTGCCT 13392 Query 143106 TTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATG 143165 | | | || | ||||| | | || || |||| ||| | ||||| |||||||| | Sbjct 13393 TGACATTGTCAATAGTGTCAGAGCTCTCAACCTCAAGAGTAATTGTCTTCCCGGTCAAGG 13452 Query 143166 TTTTTACGAATATTTGCAT 143184 |||| || || || ||||| Sbjct 13453 TTTTCACAAAGATCTGCAT 13471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506610917940480