Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_004686.1 Length=56276 Score E Sequences producing significant alignments: (Bits) Value seq63378 80.6 1e-10 >seq63378 Length=15302 Score = 80.6 bits (88), Expect = 1e-10 Identities = 139/200 (70%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 9863 CGCGGACGCCGCGGCGATCGCTCAAACGTCGCTCGACGATATGGGGTCGATCTTCAACAA 9922 ||| ||||| || | |||||| ||||||||||| ||||| |||||| ||||||| Sbjct 11792 CGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGCTCGATCATCAACAA 11851 Query 9923 G--GTCCAAACCAACGGTAAAGCGATGACTGACGATCTGCAGATGCTCGCCGATCGTGGG 9980 | | ||| ||| ||| || | || ||| | || | |||||| || || || Sbjct 11852 GACGACCA--CCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTCGCTGACCGGGGC 11909 Query 9981 TTGCCGATCTTCACGTGGCTGCAGAAGCAGTACGGGGTGACCGGTGAGGCGCTGCAGAAG 10040 | ||||||||| ||||||||||||| ||||||| || ||| || ||| | | Sbjct 11910 ATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGACAAGCTCTCGTCG 11969 Query 10041 ATGGTTTCTGACGGCAAGGT 10060 ||||| || | |||||||| Sbjct 11970 ATGGTCTCGCAGGGCAAGGT 11989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 179825547230784