Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_004687.1 Length=156102 Score E Sequences producing significant alignments: (Bits) Value seq61823 107 2e-18 seq63482 84.2 2e-11 >seq61823 Length=3776 Score = 107 bits (118), Expect = 2e-18 Identities = 113/147 (77%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 116615 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 116674 ||||||||| ||||| |||| | || ||| |||| | |||| ||| |||||||| Sbjct 1488 CGGCCCGGGTCGTGGTTCCGGTGCCGGTTCGATGGTGGCGTACGCGATGCGCATCACCGA 1547 Query 116675 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGC--CCC 116732 ||||||||||| | ||| ||||| |||||||| || |||||||||||||| | | Sbjct 1548 CCTCGACCCGATCCGGCACGGGCTGATCTTCGAGCGGTTCCTCAACCCGGACCGCGTCTC 1607 Query 116733 GACTTCCCCGACATCGACGTCGACTTC 116759 || | |||||| |||||||||||||| Sbjct 1608 GA--TGCCCGACTTCGACGTCGACTTC 1632 >seq63482 Length=21584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 94067 ACACCACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGG 94126 ||||| |||||||| | ||| |||| || |||| | ||| ||||| | || |||||||| Sbjct 13408 ACACCGCGGGGTGTGGCGCAGCTTGGTAGCGCGCCTCGTTCGGGACGAGGAGGTCGCAGG 13349 Query 94127 TTCGAATCCTGTCACCCCGAC 94147 ||| ||||||||||||||||| Sbjct 13348 TTCAAATCCTGTCACCCCGAC 13328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499000978753280