Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq63531 136 3e-27 >seq63531 Length=42858 Score = 136 bits (150), Expect = 3e-27 Identities = 185/253 (73%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 99241 GCGCCCTGTATCCGGATGGCGCTGCG-CGCCCCCACTGGCAGAAATAACCCGTCACCCAT 99299 |||||||| | ||||| || || || || ||||| ||||| || | | |||| ||| Sbjct 25842 GCGCCCTGCACGCGGATCGC-CTTCGACGACCCCATCGGCAGGAAGAGCGCGTCGCCCTG 25900 Query 99300 TCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGGGACGC 99359 || ||||| | ||||| || || ||| ||||| || ||| ||||||| ||| Sbjct 25901 CCCGATGAGCTTGTCGGCGCCCGGCTGGTCGAGGATGACGCGGGAGTCGGTGA----CGC 25956 Query 99360 T-GTG---GCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACAT 99415 | ||| ||||| | || |||||||||||||| |||||||||||| || || || | Sbjct 25957 TCGTGACCGCGAAGGCGAGGCGCGAGGGCACGTTCGCCTTGATGAGGCCGGTGACGACGT 26016 Query 99416 CCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCG 99475 | || ||||| ||||| |||||||||||||| || || ||||| || || || ||| | Sbjct 26017 CGACAGAGGGTCGCTGGGTCGCCAGGACGAGGTGGATCCCGGCGGCGCGGGCGAGCTGGG 26076 Query 99476 CGATGCGGACAAT 99488 ||||||||| || Sbjct 26077 TGATGCGGACGAT 26089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 99777 GAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGC 99836 ||||||||| | ||| ||||||| ||| |||||||| || ||||||| || || Sbjct 26435 GAGCAGCGACGTGATCATCGAGTTGACGAACGACGACTTGCCGGAACCGGTCGATCCGGC 26494 Query 99837 CACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCCTTGCCCTCGACGTCCTT 99896 || ||||| ||||||||||| |||||||| | || | ||||||||||||||| Sbjct 26495 GACGAGCAGGTGCGGCATCTTCGCCAGGTTGGCGACGACGAAGCCGCCCTCGACGTCCTT 26554 Query 99897 GCCCACTGCCACGGTCAACGGATG 99920 ||| || | | |||| ||| || Sbjct 26555 GCCGACGCCGATCGTCATCGGGTG 26578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354368030567904