Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_004688.1
Length=110865
Score E
Sequences producing significant alignments: (Bits) Value
seq63531 136 3e-27
>seq63531
Length=42858
Score = 136 bits (150), Expect = 3e-27
Identities = 185/253 (73%), Gaps = 10/253 (4%)
Strand=Plus/Plus
Query 99241 GCGCCCTGTATCCGGATGGCGCTGCG-CGCCCCCACTGGCAGAAATAACCCGTCACCCAT 99299
|||||||| | ||||| || || || || ||||| ||||| || | | |||| |||
Sbjct 25842 GCGCCCTGCACGCGGATCGC-CTTCGACGACCCCATCGGCAGGAAGAGCGCGTCGCCCTG 25900
Query 99300 TCCCATGAGTTGCTCGGCTCCGCCCTCGTCCAGGATCACCCGGCTATCGGTGAGGGACGC 99359
|| ||||| | ||||| || || ||| ||||| || ||| ||||||| |||
Sbjct 25901 CCCGATGAGCTTGTCGGCGCCCGGCTGGTCGAGGATGACGCGGGAGTCGGTGA----CGC 25956
Query 99360 T-GTG---GCGAACGACAGCCGCGAGGGCACGTTGCTCTTGATGAGGCCCGTCACCACAT 99415
| ||| ||||| | || |||||||||||||| |||||||||||| || || || |
Sbjct 25957 TCGTGACCGCGAAGGCGAGGCGCGAGGGCACGTTCGCCTTGATGAGGCCGGTGACGACGT 26016
Query 99416 CCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGCCGCACGCGCCTTCTGCG 99475
| || ||||| ||||| |||||||||||||| || || ||||| || || || ||| |
Sbjct 26017 CGACAGAGGGTCGCTGGGTCGCCAGGACGAGGTGGATCCCGGCGGCGCGGGCGAGCTGGG 26076
Query 99476 CGATGCGGACAAT 99488
||||||||| ||
Sbjct 26077 TGATGCGGACGAT 26089
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 99777 GAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGC 99836
||||||||| | ||| ||||||| ||| |||||||| || ||||||| || ||
Sbjct 26435 GAGCAGCGACGTGATCATCGAGTTGACGAACGACGACTTGCCGGAACCGGTCGATCCGGC 26494
Query 99837 CACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGAGATGTCCTTGCCCTCGACGTCCTT 99896
|| ||||| ||||||||||| |||||||| | || | |||||||||||||||
Sbjct 26495 GACGAGCAGGTGCGGCATCTTCGCCAGGTTGGCGACGACGAAGCCGCCCTCGACGTCCTT 26554
Query 99897 GCCCACTGCCACGGTCAACGGATG 99920
||| || | | |||| ||| ||
Sbjct 26555 GCCGACGCCGATCGTCATCGGGTG 26578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354368030567904
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |