Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_004778.3
Length=129593
Score E
Sequences producing significant alignments: (Bits) Value
seq16715 96.9 3e-15
seq43689 82.4 6e-11
seq32996 82.4 6e-11
>seq16715
Length=90750
Score = 96.9 bits (106), Expect = 3e-15
Identities = 161/230 (70%), Gaps = 6/230 (3%)
Strand=Plus/Plus
Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874
||||| | | ||| ||||| | || | || || ||||| |||||||||||||| |||
Sbjct 54113 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCC 54172
Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934
| ||| | | || |||| ||| ||||| ||| |||| | || ||||| || ||
Sbjct 54173 AGTGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGAGGG 54232
Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991
| |||||||||||| ||| || || || | | ||| || | ||| || |||
Sbjct 54233 ATGCCCTCTTTGTCCTGAATCTTGGCCTTAACATTGTCGATGGT---GTCAGAGCTTTCC 54289
Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
|||| |||||| || || || || || ||||||||||| ||||||||
Sbjct 54290 ACCTCGAGGGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 54339
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897
|||||| |||||||||||||| || ||||| || |||| || | | || || |||||
Sbjct 53908 GTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCTACCATCTTCGAGCTG 53967
Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957
|| || ||| | || || ||||||||||| || | ||||| ||||| ||| ||
Sbjct 53968 CTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGAATCTT 54027
Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
|| || | | | | |||||| ||||| || | || |||||||| || ||
Sbjct 54028 GGCCTTAACGTTGTCAATAGTATCAGAGCTCTCCGCCTCCAAAGTGATGGTTTTCCCAGT 54087
Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041
|| || || |||||||| |||||
Sbjct 54088 CAAGGTCTTCACAAAAATCTGCAT 54111
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/204 (69%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897
||||| |||||||||||||| || ||||| ||||||| || | | || || |||||
Sbjct 65348 GTGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTG 65407
Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957
|| || ||| | || || |||||||| ||| || | ||||| ||||| ||| ||
Sbjct 65408 CTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGAATCTT 65467
Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017
|| || | | | | ||||| | |||| || | || |||||||| || ||
Sbjct 65468 AGCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGT 65527
Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041
|| || || |||||||| |||||
Sbjct 65528 CAAGGTCTTCACAAAAATCTGCAT 65551
>seq43689
Length=21515
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/209 (69%), Gaps = 8/209 (4%)
Strand=Plus/Minus
Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCA 18893
||||| || |||||||| || |||||||| || || | || |||||| || |
Sbjct 2637 GTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGT----GCGTCCATCTTCAA 2582
Query 18894 GCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAA 18953
|||| ||||| ||| | || || |||||||| || || | ||||||||||| ||
Sbjct 2581 GCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCCTGAA 2522
Query 18954 TTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTAC 19013
| || ||| || | | ||| || || | |||| || | ||| ||||| ||||
Sbjct 2521 TCTTAGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATGGTCTTAC 2462
Query 19014 CTGTTAAAGTTTTGACAAAAATTTGCATT 19042
| ||||| || || ||||| || ||||||
Sbjct 2461 CGGTTAAGGTCTTCACAAAGATCTGCATT 2433
>seq32996
Length=3898
Score = 82.4 bits (90), Expect = 6e-11
Identities = 152/223 (68%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 18819 CTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTG 18878
||| ||| | ||||||| || | || |||||||| || || || || || || | |
Sbjct 866 CTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAG 925
Query 18879 TTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGC 18938
| | ||||||| || |||||||| ||| | || | || |||||| || ||| | |
Sbjct 926 TCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATAC 985
Query 18939 CCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGA 18998
|||| ||||| ||| || ||| || | | | | ||||| | ||| || |
Sbjct 986 CCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCA 1045
Query 18999 CGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041
||||| || || || || ||||| |||||||||||||||||
Sbjct 1046 ATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1088
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414251130891616
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |