Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq16715 96.9 3e-15 seq43689 82.4 6e-11 seq32996 82.4 6e-11 >seq16715 Length=90750 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| | | ||| ||||| | || | || || ||||| |||||||||||||| ||| Sbjct 54113 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCC 54172 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | || |||| ||| ||||| ||| |||| | || ||||| || || Sbjct 54173 AGTGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGAGGG 54232 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GC--TCC 18991 | |||||||||||| ||| || || || | | ||| || | ||| || ||| Sbjct 54233 ATGCCCTCTTTGTCCTGAATCTTGGCCTTAACATTGTCGATGGT---GTCAGAGCTTTCC 54289 Query 18992 GTTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| |||||| || || || || || ||||||||||| |||||||| Sbjct 54290 ACCTCGAGGGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 54339 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 |||||| |||||||||||||| || ||||| || |||| || | | || || ||||| Sbjct 53908 GTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCTACCATCTTCGAGCTG 53967 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | || || ||||||||||| || | ||||| ||||| ||| || Sbjct 53968 CTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGAATCTT 54027 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | |||||| ||||| || | || |||||||| || || Sbjct 54028 GGCCTTAACGTTGTCAATAGTATCAGAGCTCTCCGCCTCCAAAGTGATGGTTTTCCCAGT 54087 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| Sbjct 54088 CAAGGTCTTCACAAAAATCTGCAT 54111 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||||| |||||||||||||| || ||||| ||||||| || | | || || ||||| Sbjct 65348 GTGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTG 65407 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 || || ||| | || || |||||||| ||| || | ||||| ||||| ||| || Sbjct 65408 CTTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGAATCTT 65467 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 || || | | | | ||||| | |||| || | || |||||||| || || Sbjct 65468 AGCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGT 65527 Query 19018 TAAAGTTTTGACAAAAATTTGCAT 19041 || || || |||||||| ||||| Sbjct 65528 CAAGGTCTTCACAAAAATCTGCAT 65551 >seq43689 Length=21515 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/209 (69%), Gaps = 8/209 (4%) Strand=Plus/Minus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCC----TCCA 18893 ||||| || |||||||| || |||||||| || || | || |||||| || | Sbjct 2637 GTGCAGAGTGGACTCCTTCTGGATATTGTAGTCAGCAAGGGT----GCGTCCATCTTCAA 2582 Query 18894 GCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAA 18953 |||| ||||| ||| | || || |||||||| || || | ||||||||||| || Sbjct 2581 GCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCCTGAA 2522 Query 18954 TTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTAC 19013 | || ||| || | | ||| || || | |||| || | ||| ||||| |||| Sbjct 2521 TCTTAGCTTTCACATTGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATGGTCTTAC 2462 Query 19014 CTGTTAAAGTTTTGACAAAAATTTGCATT 19042 | ||||| || || ||||| || |||||| Sbjct 2461 CGGTTAAGGTCTTCACAAAGATCTGCATT 2433 >seq32996 Length=3898 Score = 82.4 bits (90), Expect = 6e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 18819 CTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTG 18878 ||| ||| | ||||||| || | || |||||||| || || || || || || | | Sbjct 866 CTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAG 925 Query 18879 TTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGC 18938 | | ||||||| || |||||||| ||| | || | || |||||| || ||| | | Sbjct 926 TCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATAC 985 Query 18939 CCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGA 18998 |||| ||||| ||| || ||| || | | | | ||||| | ||| || | Sbjct 986 CCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCCA 1045 Query 18999 CGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||||| || || || || ||||| ||||||||||||||||| Sbjct 1046 ATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCAT 1088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414251130891616