Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq16715 89.7 3e-13
seq24164 87.8 1e-12
seq6347 84.2 1e-11
>seq16715
Length=90750
Score = 89.7 bits (98), Expect = 3e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220
||||| || | || ||||| || || || |||||||||| | | || ||| ||
Sbjct 66027 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGTCCGTCCTCA 66086
Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280
| |||||||| ||| || || | ||||||||| | ||| |||||||| || ||
Sbjct 66087 AGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 66146
Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340
||| ||| || | | ||| |||||| | || ||| || || || || || |||
Sbjct 66147 ATCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 66206
Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| || ||||| || ||||||||||||||
Sbjct 66207 CCGGTCAGAGTCTTCACGAAAATTTGCAT 66235
Score = 82.4 bits (90), Expect = 5e-11
Identities = 151/216 (70%), Gaps = 14/216 (6%)
Strand=Plus/Plus
Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT-TGGTCATC 33219
||||| || | || ||||| || || ||||||||||||| ||| | || || ||||
Sbjct 54587 ACCAAGTGAAGAGTTGACTCCTTCTGGATATTGTAATCAG-CAA---GGGTCCGGCCATC 54642
Query 33220 C---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276
| | ||||||||| ||| || || | ||||||||| | ||| |||||||| || ||
Sbjct 54643 CTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTC 54702
Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333
|||| ||| || || | | ||| ||||| | || ||| || || || ||
Sbjct 54703 CTGAATCTTGGCC---TTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTAAT 54759
Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||||| || |||||||| || || || |||||
Sbjct 54760 TGTCTTTCCAGTGAGAGTTTTAACAAATATCTGCAT 54795
>seq24164
Length=196930
Score = 87.8 bits (96), Expect = 1e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239
|||| || || |||||||||| | | | || || || | |||||||| || |
Sbjct 29744 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 29685
Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299
| || || |||||||||| || || ||||| || || |||| ||| || | |
Sbjct 29684 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 29625
Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359
||| |||||| | | || ||| || || || ||||| || |||||||||||||| ||||
Sbjct 29624 CAATAGTGTCGCTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 29565
Query 33360 AAATTTGCATGTT 33372
| || ||||| ||
Sbjct 29564 AGATCTGCATTTT 29552
>seq6347
Length=16439
Score = 84.2 bits (92), Expect = 1e-11
Identities = 161/234 (69%), Gaps = 14/234 (6%)
Strand=Plus/Plus
Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202
|| ||||| || || | ||||||||| | ||| |||||||| || ||||||||||||| |
Sbjct 12561 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAG-C 12619
Query 33203 AAATTGAGT----TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258
|| |||| || || | ||||| ||| ||| |||||||| |||||||| |
Sbjct 12620 AA---GAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGG 12676
Query 33259 GGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315
|| || |||||||| || | | | ||| || || | | ||| |||||
Sbjct 12677 TGGAATCCCTTCTTTGTCTTGGATCTTTGCC---TTCACGTTATCAATGGTGTCTGAACT 12733
Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369
|| ||| ||||| || || || || || || | || || || ||||| |||||
Sbjct 12734 TTCAACCTCCAGGGTGATTGTCTTGCCGGTTAATGTCTTCACAAAAATCTGCAT 12787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318530258866272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |