Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq16715 89.7 3e-13 seq24164 87.8 1e-12 seq6347 84.2 1e-11 >seq16715 Length=90750 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||| || | || ||||| || || || |||||||||| | | || ||| || Sbjct 66027 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGTCCGTCCTCA 66086 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 | |||||||| ||| || || | ||||||||| | ||| |||||||| || || Sbjct 66087 AGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 66146 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 ||| ||| || | | ||| |||||| | || ||| || || || || || ||| Sbjct 66147 ATCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 66206 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || ||||| || |||||||||||||| Sbjct 66207 CCGGTCAGAGTCTTCACGAAAATTTGCAT 66235 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/216 (70%), Gaps = 14/216 (6%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGT-TGGTCATC 33219 ||||| || | || ||||| || || ||||||||||||| ||| | || || |||| Sbjct 54587 ACCAAGTGAAGAGTTGACTCCTTCTGGATATTGTAATCAG-CAA---GGGTCCGGCCATC 54642 Query 33220 C---AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 | | ||||||||| ||| || || | ||||||||| | ||| |||||||| || || Sbjct 54643 CTCAAGCTGCTTTCCAGCAAAGATCAACCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTC 54702 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 |||| ||| || || | | ||| ||||| | || ||| || || || || Sbjct 54703 CTGAATCTTGGCC---TTAACATTGTCAATGGTGTCAGAGCTTTCAACCTCAAGGGTAAT 54759 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || |||||||| || || || ||||| Sbjct 54760 TGTCTTTCCAGTGAGAGTTTTAACAAATATCTGCAT 54795 >seq24164 Length=196930 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 33180 CTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATA 33239 |||| || || |||||||||| | | | || || || | |||||||| || | Sbjct 29744 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 29685 Query 33240 TTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGTTTTACTGTTT 33299 | || || |||||||||| || || ||||| || || |||| ||| || | | Sbjct 29684 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 29625 Query 33300 GAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGA 33359 ||| |||||| | | || ||| || || || ||||| || |||||||||||||| |||| Sbjct 29624 CAATAGTGTCGCTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 29565 Query 33360 AAATTTGCATGTT 33372 | || ||||| || Sbjct 29564 AGATCTGCATTTT 29552 >seq6347 Length=16439 Score = 84.2 bits (92), Expect = 1e-11 Identities = 161/234 (69%), Gaps = 14/234 (6%) Strand=Plus/Plus Query 33143 CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGAC 33202 || ||||| || || | ||||||||| | ||| |||||||| || ||||||||||||| | Sbjct 12561 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAG-C 12619 Query 33203 AAATTGAGT----TGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGT 33258 || |||| || || | ||||| ||| ||| |||||||| |||||||| | Sbjct 12620 AA---GAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGG 12676 Query 33259 GGGTATGCCTTCTTT---TTCGCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGG 33315 || || |||||||| || | | | ||| || || | | ||| ||||| Sbjct 12677 TGGAATCCCTTCTTTGTCTTGGATCTTTGCC---TTCACGTTATCAATGGTGTCTGAACT 12733 Query 33316 TTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||| ||||| || || || || || || | || || || ||||| ||||| Sbjct 12734 TTCAACCTCCAGGGTGATTGTCTTGCCGGTTAATGTCTTCACAAAAATCTGCAT 12787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318530258866272