Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq32996 105 5e-18 seq6347 93.3 3e-14 >seq32996 Length=3898 Score = 105 bits (116), Expect = 5e-18 Identities = 160/225 (71%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 43899 CTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATT 43958 ||||||| | ||||||||||| || || ||| || || || ||||| || | || Sbjct 866 CTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTC-TGCAAGA 924 Query 43959 G-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACA 44017 | | | | || || | |||||| || ||||| ||||| || |||||||| | || | | Sbjct 925 GTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATA 984 Query 44018 CCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCG 44077 || || || ||| ||| ||| |||||| | ||| ||||||| ||| || || Sbjct 985 CCCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCC 1044 Query 44078 ACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 | |||||||| || || || |||||||| ||||| ||||||||| Sbjct 1045 AATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 1089 Score = 87.8 bits (96), Expect = 1e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||| ||||| ||||| | |||||||| |||| | ||| || | Sbjct 1388 CATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCT 1447 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | ||| || ||| ||| || | | | |||||||| ||| || || | |||| Sbjct 1448 TGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCAACCTCCAAAGTAA 1507 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||| || || || || ||||| ||||||||||||||| Sbjct 1508 TTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCATG 1545 >seq6347 Length=16439 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 ||||||||||| | | ||||||||| || ||| |||||| || ||||| ||||| Sbjct 12561 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAGC- 12619 Query 43955 AATTGACGCT--CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012 || | | || |||| || | || || || ||||| || || || |||||||| | | Sbjct 12620 AAGAGTC-CTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTG 12678 Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072 | | |||||||| ||| || ||| || || || ||| || |||| || | Sbjct 12679 GAATCCCTTCTTTGTCTTGGATCTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCAA 12738 Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || | || ||||| || |||||||| ||||||||||| || ||||| Sbjct 12739 CCTCCAGGGTGATTGTCTTGCCGGTTAATGTCTTCACAAAAATCTGCAT 12787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354502326286272