Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_005068.1
Length=110907
Score E
Sequences producing significant alignments: (Bits) Value
seq32996 105 5e-18
seq6347 93.3 3e-14
>seq32996
Length=3898
Score = 105 bits (116), Expect = 5e-18
Identities = 160/225 (71%), Gaps = 2/225 (1%)
Strand=Plus/Plus
Query 43899 CTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATT 43958
||||||| | ||||||||||| || || ||| || || || ||||| || | ||
Sbjct 866 CTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTC-TGCAAGA 924
Query 43959 G-ACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACA 44017
| | | | || || | |||||| || ||||| ||||| || |||||||| | || | |
Sbjct 925 GTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATA 984
Query 44018 CCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCG 44077
|| || || ||| ||| ||| |||||| | ||| ||||||| ||| || ||
Sbjct 985 CCCTCCTTGTCTTGAATCTTTGCTTTGACATTGTCAATGGTATCTGAACTCTCAACCTCC 1044
Query 44078 ACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
| |||||||| || || || |||||||| ||||| |||||||||
Sbjct 1045 AATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 1089
Score = 87.8 bits (96), Expect = 1e-12
Identities = 114/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024
|||| || | ||| ||||| ||||| ||||| | |||||||| |||| | ||| || |
Sbjct 1388 CATCCTCAAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGGTCTGGAGGAATACCCTCCT 1447
Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084
| ||| || ||| ||| || | | | |||||||| ||| || || | ||||
Sbjct 1448 TGTCTTGGATCTTTGCTTTAACATTGTCGATAGTATCTGAACTCTCAACCTCCAAAGTAA 1507
Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122
|||| || || || || ||||| |||||||||||||||
Sbjct 1508 TTGTCTTCCCTGTCAATGTCTTAACAAATATTTGCATG 1545
>seq6347
Length=16439
Score = 93.3 bits (102), Expect = 3e-14
Identities = 160/229 (70%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954
||||||||||| | | ||||||||| || ||| |||||| || ||||| |||||
Sbjct 12561 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAGC- 12619
Query 43955 AATTGACGCT--CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAG 44012
|| | | || |||| || | || || || ||||| || || || |||||||| | |
Sbjct 12620 AAGAGTC-CTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTG 12678
Query 44013 GTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCA 44072
| | |||||||| ||| || ||| || || || ||| || |||| || |
Sbjct 12679 GAATCCCTTCTTTGTCTTGGATCTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCAA 12738
Query 44073 CATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121
| || | || ||||| || |||||||| ||||||||||| || |||||
Sbjct 12739 CCTCCAGGGTGATTGTCTTGCCGGTTAATGTCTTCACAAAAATCTGCAT 12787
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 354502326286272
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |