Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq6171 95.1 1e-14
>seq6171
Length=36435
Score = 95.1 bits (104), Expect = 1e-14
Identities = 353/550 (64%), Gaps = 5/550 (1%)
Strand=Plus/Minus
Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206
|| ||| ||||||||||||||||| ||||| ||||| |||| ||| ||||| || ||
Sbjct 4969 CAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGT 4910
Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCG-aaa 13265
|| || ||||| | ||| |||||||| | ||||||||| | | || | | ||| |
Sbjct 4909 TAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCTTCCGCTGA 4851
Query 13266 aaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTAC 13325
| || || |||||||| ||||| || | ||| | || | | | | | ||
Sbjct 4850 AGAAAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAA---AGTTTCGGAAC 4794
Query 13326 TCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTG 13385
|| ||||| |||||| || || || | || ||| || || | || ||||
Sbjct 4793 CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTG 4734
Query 13386 CGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTAT 13445
| || || | | ||||| | | || || || | || | || || || |
Sbjct 4733 CACGGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGT 4674
Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505
|||| || ||||| ||||| || || || |||||||| ||||| ||| | ||||| |
Sbjct 4673 ACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAG 4614
Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565
||||| || || || ||| |||| | ||| || ||| || ||||| |
Sbjct 4613 CAACCTGGACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGG 4554
Query 13566 CAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACC 13625
| |||||||| ||||| | || | || || | | |||| || | ||| ||
Sbjct 4553 CGGCAAAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCC 4494
Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685
| | || ||| |||| ||| || || || || ||||| ||||| || | || |
Sbjct 4493 AGTGACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTT 4434
Query 13686 TCTTATACAT 13695
|||| |||||
Sbjct 4433 TCTTGTACAT 4424
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430647998600928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |