Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6171 95.1 1e-14 >seq6171 Length=36435 Score = 95.1 bits (104), Expect = 1e-14 Identities = 353/550 (64%), Gaps = 5/550 (1%) Strand=Plus/Minus Query 13147 CATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGT 13206 || ||| ||||||||||||||||| ||||| ||||| |||| ||| ||||| || || Sbjct 4969 CAAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGT 4910 Query 13207 TAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCG-aaa 13265 || || ||||| | ||| |||||||| | ||||||||| | | || | | ||| | Sbjct 4909 TAATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCTTCCGCTGA 4851 Query 13266 aaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTAC 13325 | || || |||||||| ||||| || | ||| | || | | | | | || Sbjct 4850 AGAAAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAA---AGTTTCGGAAC 4794 Query 13326 TCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTG 13385 || ||||| |||||| || || || | || ||| || || | || |||| Sbjct 4793 CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTG 4734 Query 13386 CGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTAT 13445 | || || | | ||||| | | || || || | || | || || || | Sbjct 4733 CACGGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGT 4674 Query 13446 ACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTG 13505 |||| || ||||| ||||| || || || |||||||| ||||| ||| | ||||| | Sbjct 4673 ACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAG 4614 Query 13506 ATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAG 13565 ||||| || || || ||| |||| | ||| || ||| || ||||| | Sbjct 4613 CAACCTGGACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGG 4554 Query 13566 CAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACC 13625 | |||||||| ||||| | || | || || | | |||| || | ||| || Sbjct 4553 CGGCAAAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCC 4494 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 | | || ||| |||| ||| || || || || ||||| ||||| || | || | Sbjct 4493 AGTGACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTT 4434 Query 13686 TCTTATACAT 13695 |||| ||||| Sbjct 4433 TCTTGTACAT 4424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430647998600928