Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_005345.2 Length=49220 Score E Sequences producing significant alignments: (Bits) Value seq63378 327 4e-85 seq63249 91.5 5e-14 >seq63378 Length=15302 Score = 327 bits (362), Expect = 4e-85 Identities = 731/1081 (68%), Gaps = 46/1081 (4%) Strand=Plus/Plus Query 23922 GAACAGGCCGAGTTCCTGCTGCGGTTCTACGAGCTGCACCCGGTGACCGGCCGGCGGGTG 23981 || ||| |||||||||| | || |||||||| | ||||| ||| || |||| | Sbjct 2738 GAGCAGCTCGAGTTCCTGATCCGCCTCTACGAGATCGACCCGCGCACCTGCAAGCGGATC 2797 Query 23982 ATTCACCGCGGGCTGCTGTC--GCGGCCGCGAGGCTGGGGCAAGTCGCCGTTCGTCGGCG 24039 | ||||| ||| || ||| || ||||||||||||||||| |||||| ||| || Sbjct 2798 AAGACCCGCG--CTGTCATCCAGCGACCCCGAGGCTGGGGCAAGTCCCCGTTCCTCGCCG 2855 Query 24040 CGATCGCGCTCGCCGAGGCGTGTGCCGATGTGGTTGCCGACGGATGGGACGCGTACGGCG 24099 ||| || ||| ||| ||| ||| || || ||||||| |||||||| |||| Sbjct 2856 CGACCGGCATCGGCGAAGCGCTCTTCGAGGTCGTCCCCGACGGCTGGGACGCCGACGGGC 2915 Query 24100 AGCCGATCGGCCGGCCGTGGCACTCGGTGCGT-ACGCCGCTCGTG--CGTATCG----CC 24152 |||| ||| ||| |||||| ||| | | | | || || | ||| || || Sbjct 2916 AGCCCGTCGCCCGCCCGTGGA--TCGA--CTTCAAGACGATCATCAACGTCCCGGTCACC 2971 Query 24153 GCGGTGACCGAGGCGCAGACCGATAACACATGGATCCCGCTCCTCGAAATGGCGCGGGGC 24212 ||| |||| | ||| | ||||| ||| ||| | ||||| |||||||| | Sbjct 2972 GCGACCTCCGATGACCAGGTGCAGAACACGTGGGCACCGATGCTCGAGATGGCGCGCACC 3031 Query 24213 GGTTCGCT-GTCGACCGACTACGGGCTCGACGTCCTCGACACGGTCATCTATCTGCCGCG 24271 | |||| ||| || || | || ||||| | |||||| ||||| | || | Sbjct 3032 GACGCGCTTGTCAAC-GAGTTCGACGTCGACCCGATGGACACGTTCATCGCGATCCCCGG 3090 Query 24272 CGGTGAGATCTCTCCGATCACGTCGTCGGCATCCTCGGTCAAGGGTGACCCGGCGTGCTT 24331 ||| ||||| ||| ||| ||||| | || ||||||| ||| | | | Sbjct 3091 CGGCAAGATCGAGCCGCGCACCTCGTCCGGCCGGTCCATCAAGGGCCTCCCCGGGCAGGT 3150 Query 24332 TGCCTCGCTC---GATCAGACCGAGGAGTGGCGGGAGTCCAACGGCGGGATCCGGCTCGC 24388 ||| || || || ||||||||||||||| || ||||||||| |||| || || Sbjct 3151 CGCCGCGATCATGGACCAGACCGAGGAGTGGGTCAAGGGCAACGGCGGTCTCCGCCTGGC 3210 Query 24389 GAAGACCATGCGGTTCAACGCGGCCAAGCTCGGCGGCAGCATCATCGAGACGCCGAACGC 24448 | ||| ||| || |||| || | ||| ||||| || |||||| | |||||||| Sbjct 3211 GCAGAACATCCGCAACAACTCGACGAAGGCGTCCGGCATCACGATCGAGTCCCCGAACGC 3270 Query 24449 GTTCACGCCGGGCGAGGGTTCGGTCGCGGAGAACTCGGCGGCCGACTATCAGGCGATC-- 24506 |||||| || |||||| |||||||| ||| || ||| ||||| || |||| Sbjct 3271 GTTCACCCCTGGCGAGAACTCGGTCGCCGAGGCATCCGCGCGCGACTGGGAGCTGATCGA 3330 Query 24507 ATCGACGG-----CCGGTCC---CGG--GCCCGCGGGATCCTGGTCGACCACCGCGAGGC 24556 ||| | || | || ||| |||||| |||||| |||||||||||| || Sbjct 3331 ATCTGGGAAATACCCAGACCTCGCGGCCGCCCGCCAGATCCTCTACGACCACCGCGAAGC 3390 Query 24557 GCCCGGCGACACCGACATGTCCGACGAGCAGTCGCTCGTCGCCGGCCTGCGGTACGCGTA 24616 ||| | |||||||||| ||||| |||| || |||||||||| ||||||||||| Sbjct 3391 GCCGGCCGACACCGACCCCGCCGACCGCGAGTCCCTGATCGCCGGCCTCCGGTACGCGTA 3450 Query 24617 CGGCGACAGCAGCGATCATCCCGACGGGTGCGTGCTGCACGATCCGCCGTGCGGGCCGGG 24676 |||||||||| || || |||||||| ||||| | ||| | |||||||||| ||| || Sbjct 3451 CGGCGACAGCTCGGACCACCCCGACGGCTGCGTCATCCACCAGCCGCCGTGCGAGCCCGG 3510 Query 24677 TTGGTCGCCGATCGAGCGGCTCACGGGCGAGTTCTGGGACACCTCGAACGATCCGCAAGA 24736 ||| | ||||||||||||| || | |||| ||||| |||||||| ||||| | Sbjct 3511 CTGGGCACCGATCGAGCGGCAGGCGCTGGCGTTCCTCGACACGTCGAACGACCCGCAGGT 3570 Query 24737 TCTGCGGGCCGACTTCCTGAATCAGATCACGCACGCGTCGGACGCGTGGCTGTCGCAGCC 24796 || || ||||||||||| || |||||||| |||||| || || ||| | |||||||| Sbjct 3571 GCTCCGCGCCGACTTCCTCAACCAGATCACCCACGCGACGAACTCGTTCGTCTCGCAGCC 3630 Query 24797 CGAAGTGCGGGCGTCGTCCGAC-CTCGGCAAGGTGGTGCAGCCGGGCGACCGGATCGTGC 24855 ||| | |||| || | | |||| |||||| | | | ||| | | || || Sbjct 3631 CGAGCTCAAGGCG-ATTCAGGCACTCGACAAGGTCATCTCGAAGACCGAGCCGGTCACGC 3689 Query 24856 TCGGGTTCGACGGCTC------GCGCAAGCGGTCCCGC---GGCGTGACGGACGCGACCG 24906 |||| ||||||||||| |||||||| || || ||| | ||| |||| | Sbjct 3690 TCGGCTTCGACGGCTCCGAGGGGCGCAAGC---CCGGCAAGGGCACTGCCGACTCGACGG 3746 Query 24907 CGCTGATCGGCTGCCGCCTGTCGGACGGGCACCTGTTCACGCTCGGCGTGTGGGAGCAGC 24966 || || |||| | | | | | |||||| |||| | ||||||| |||||||||| Sbjct 3747 TCCTCATTGGCTACTCCGTCACCCAGAAGCACCTCTTCAAGGTCGGCGTCTGGGAGCAGC 3806 Query 24967 C 24967 | Sbjct 3807 C 3807 Score = 98.7 bits (108), Expect = 3e-16 Identities = 192/280 (69%), Gaps = 3/280 (1%) Strand=Plus/Plus Query 23415 CCCGACTTCCGCATTG-AGCAGGGCGGGCAGCTCGTCGAGTTCGTGTGGCCCGAGCGCAC 23473 |||||| |||| || || ||| ||| ||||| ||||||| |||||| | ||| Sbjct 2285 CCCGACCATCGCAGTGGAGGAGGACGGCGAGCTCCGCGAGTTCAAGTGGCCGGCCATCAC 2344 Query 23474 CCGCGAGTGGTGGGCGATGTGGATTGAGTCGCCGCAGGCCGATC-ACTTCGGCTCGTCCG 23532 |||||||||||||| |||||| ||||| | | | || ||||| | || ||| Sbjct 2345 CCGCGAGTGGTGGGACATGTGGGCGACCTCGCCCCTCTC-GCTCGACTTCACCGCGACCG 2403 Query 23533 ACTGGCAGTTCCTGCTCGACACCGCCCTGATTCACGCTCGGCTGTGGCGAGGTGACCTGT 23592 ||||| |||| ||||||||| || || ||||| || ||| || ||| | Sbjct 2404 ACTGGTCCGAGCTGCGCGACACCGCACTCATCCACGCGCGCTACTGGAACGGCGACATCA 2463 Query 23593 CGGCCGCGTCCGAGCTGCGGCTGCGGGTCGCGGCGTTCGGCGCGACGCCGGCGGACCGGG 23652 | ||| ||||||| || || || |||| |||||||||||| || | |||||| | Sbjct 2464 AGCTCGCCGCCGAGCTCCGTCTCCGCACCGCGAAGTTCGGCGCGACCCCCGAGGACCGCG 2523 Query 23653 CACGGCTGCGCATGGTGTTCGCCGAGGCGGACGGCGCCGA 23692 | ||||| || || |||||| |||| || | ||||| Sbjct 2524 CGCGGCTCCGGATCACGTTCGCGCAGGCTGAGGAGGCCGA 2563 >seq63249 Length=12027 Score = 91.5 bits (100), Expect = 5e-14 Identities = 132/179 (74%), Gaps = 12/179 (7%) Strand=Plus/Plus Query 7426 TTCGACCTCGAAACGACGGGCGTTGACGTCGAGCAGGACCGGATCGTGACCGCGGCAGCG 7485 ||||||||||| || || ||||| ||||||||| | ||||||||| || ||| || || Sbjct 4160 TTCGACCTCGAGACCACCGGCGTCGACGTCGAGACCGCCCGGATCGTCACGGCG-CA-CG 4217 Query 7486 ATCGACCTCGGCGCCGAGAA-----GCCCC-TCA-CGCTGGAG--TGGCTCGCCGACCCG 7536 ||| ||| || | || || || || || || | |||||||| ||||| Sbjct 4218 -TCGGCCTGATCGACATGACCGGTCGCTCCATCGTCGAGGGTGCATGGCTCGCAGACCCC 4276 Query 7537 GGGATCGAGATCCCCGAGGGTGCGACGGCCGTGCACGGCATCACGACCGAGCACGCCCG 7595 || | |||||||||||||| ||| | || |||||||||||||| ||||||| ||||| Sbjct 4277 GGCGTGGAGATCCCCGAGGGCGCGGCAGCGGTGCACGGCATCACCACCGAGCGTGCCCG 4335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157263417331776