Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq43689 93.3 4e-14 seq6200 91.5 1e-13 seq46021 86.0 5e-12 >seq43689 Length=21515 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 ||||| | || ||| | ||| || ||||| ||| |||||| ||||||||||| || || Sbjct 2432 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGC- 2374 Query 48560 AATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 || || || | ||||| ||||| ||||| || | || || | |||||| || || Sbjct 2373 AAGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGG 2314 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | || |||||||| || || ||||| | | ||||| |||| ||| Sbjct 2313 AATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAAC 2254 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||| | |||||||| || ||||| || || || |||||||||||||| Sbjct 2253 CTCAAGGGTTATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 2206 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 |||||| || | | | ||| ||||| || || |||||| || |||||||||||||| Sbjct 1521 ACCTCCACGTAGACGGAGCACCAAATGGAGGGTAGACTCCTTCTGGATGTTGTAATCAGC 1462 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | || ||||||||| |||||| ||| || | || | | ||||||||| || Sbjct 1461 TAGAGTACGTCCGTCCTCCAACTGCTTTCCGGCGAAGATAAGCCTTTGCTGATCCGGGGG 1402 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCC 48676 | | |||||| ||| || || ||| | | | || || ||||| | | ||| Sbjct 1401 AATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCG--ATTGTATCAGAACTTTCC 1344 Query 48677 GTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || || || |||||||||||||||||||| ||||||||| Sbjct 1343 ACCTCTAGGGTGATAGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCATC 1293 >seq6200 Length=22545 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| | ||| || || |||||| || |||||||| || || || || || | |||| Sbjct 22085 CACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGC-AAGAGTACGACCATCCT 22143 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| ||| || |||| ||||||||||| || || | | |||||||||| Sbjct 22144 CAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCT 22203 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 || || |||| | | ||||| |||| |||||| ||| | || || || | Sbjct 22204 GGATCTTGGCTTTGACATTATCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCT 22263 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 | || || || |||||||| || ||||||||| Sbjct 22264 TCCCCGTTAGGGTTTTCACGAAGATCTGCATC 22295 >seq46021 Length=44830 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| ||||| | | ||| | ||||| |||||||||||| || | Sbjct 38769 CTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGTCCATCCTCGAGCTGCTTACCGGCGAA 38710 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || ||||| || || || | | ||||||||| ||| || ||| | | Sbjct 38709 AATCAATCGCTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATT 38650 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | ||||| ||| | || || || || || || || || ||||| Sbjct 38649 GTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCAC 38590 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 38589 AAAGATCTGCAT 38578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420924349087664