Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq18674 122 5e-23 seq11146 118 6e-22 seq10449 118 6e-22 seq9837 118 6e-22 seq33810 116 2e-21 seq18622 114 7e-21 seq13621 114 7e-21 seq13143 114 7e-21 seq9212 114 7e-21 seq6108 114 7e-21 seq5419 113 2e-20 seq43148 111 8e-20 seq37307 111 8e-20 seq16622 111 8e-20 seq9359 111 8e-20 seq13549 109 3e-19 seq13508 109 3e-19 seq8717 109 3e-19 seq7450 109 3e-19 seq6203 109 3e-19 seq53396 96.9 2e-15 seq10605 87.8 9e-13 seq16614 86.0 3e-12 seq30957 82.4 4e-11 seq18766 82.4 4e-11 >seq18674 Length=66613 Score = 122 bits (134), Expect = 5e-23 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 28301 AACAAAAAATAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 28360 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 28361 GACGCTCTAACCAACTGAGCTAATGGGCC 28389 >seq11146 Length=11042 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || ||| |||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 596 AAAAACAAAACAAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 655 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||| |||||||||||||||||||| Sbjct 656 GACGTTCTAACCAACTGAGCTAATGGGCC 684 >seq10449 Length=31035 Score = 118 bits (130), Expect = 6e-22 Identities = 82/93 (88%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 || |||||||||| | |||||||||| | | |||||||| ||||||||||||||||| Sbjct 1121 AAGTAATAAAAAA---ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 1177 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 1178 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 1210 >seq9837 Length=5180 Score = 118 bits (130), Expect = 6e-22 Identities = 79/89 (89%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || || ||| ||||||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 4988 AAAAACAAAACAAATTGGCCCATACAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 5047 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 5048 GACGCTCTAACCAACTGAGCTAATGGGCC 5076 >seq33810 Length=11576 Score = 116 bits (128), Expect = 2e-21 Identities = 88/105 (84%), Gaps = 6/105 (6%) Strand=Plus/Plus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||| ||| | | ||||||||||||| |||||||| | | |||||||| ||||| Sbjct 5738 AGGAAAAAAAGGCATTAATAAAAAAT------GGCCCATGCAGGTCTCGAACCTGCGACC 5791 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| |||||||||||||||||||| Sbjct 5792 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 5836 >seq18622 Length=64711 Score = 114 bits (126), Expect = 7e-21 Identities = 77/86 (90%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 48541 AAAAAAT--ATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 48484 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||||||||| Sbjct 48483 GCTCTAACCAACTGAGCTAATGGGCC 48458 >seq13621 Length=100249 Score = 114 bits (126), Expect = 7e-21 Identities = 79/89 (89%), Gaps = 2/89 (2%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 53778 AATAAAAAAATAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 53721 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||||||||||||||| Sbjct 53720 GACGCTCTAACCAACTGAGCTAATGGGCC 53692 >seq13143 Length=33875 Score = 114 bits (126), Expect = 7e-21 Identities = 80/92 (87%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||| | |||| |||| ||||||||| | | ||||| || |||||||||||||||||| Sbjct 20727 ATTAGGATAAAAACAAAGTGGCCCATGCAGGTCTCGAATCTGCGACCTTCGCGTTATTAG 20786 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| |||||||||||||||||||| Sbjct 20787 CACGACGCTCTAACCAACTGAGCTAATGGGCC 20818 >seq9212 Length=49004 Score = 114 bits (126), Expect = 7e-21 Identities = 81/93 (87%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAA----TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 |||||||||| | | |||||||||| | | |||||||| ||||||||||||||||| Sbjct 31517 AATAAAAAATTATAGAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTA 31576 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||| |||||||||||||||||||| Sbjct 31577 GCACGACGCTCTAACCAACTGAGCTAATGGGCC 31609 >seq6108 Length=22997 Score = 114 bits (126), Expect = 7e-21 Identities = 99/120 (83%), Gaps = 4/120 (3%) Strand=Plus/Minus Query 11420 AATCCAGGGAAATATAGAATTAATAAAAAATC--AAATTGGCCCATGAAAGGATCGAACC 11477 || || | ||||| || |||| |||||||| ||| ||||||||| | | ||||||| Sbjct 6744 AACCCTGCGAAAT-TATAATTG-TAAAAAATGTAAAAATGGCCCATGCAGGTCTCGAACC 6687 Query 11478 TTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGA 11537 | |||||||||||||||||||||||||| || |||||||||||||||||||| | || || Sbjct 6686 TGCGACCTTCGCGTTATTAGCACGACGCACTAACCAACTGAGCTAATGGGCCTTTGATGA 6627 >seq5419 Length=23188 Score = 113 bits (124), Expect = 2e-20 Identities = 70/76 (92%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 ||||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| Sbjct 4355 ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 4414 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 4415 ACTGAGCTAATGGGCC 4430 >seq43148 Length=34492 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 9134 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 9075 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 9074 CAACTGAGCTAATGGGCC 9057 >seq37307 Length=3050 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| |||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 1534 AAAAAACAA-TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 1592 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| ||||||||||||||| Sbjct 1593 CTCTAACCAGCTGAGCTAATGGGCC 1617 >seq16622 Length=93860 Score = 111 bits (122), Expect = 8e-20 Identities = 71/78 (91%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||| ||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 27948 AAATTAGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 28007 Query 11512 CAACTGAGCTAATGGGCC 11529 |||||||||||||||||| Sbjct 28008 CAACTGAGCTAATGGGCC 28025 >seq9359 Length=35686 Score = 111 bits (122), Expect = 8e-20 Identities = 76/85 (89%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||||| ||| || ||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 8714 AAAAAACAA-TTAGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACG 8772 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||||||||| Sbjct 8773 CTCTAACCAACTGAGCTAATGGGCC 8797 >seq13549 Length=56247 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2649 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2708 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2709 TGAGCTAATGGGCC 2722 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2838 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2897 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 2898 TGAGCTAATGGGCC 2911 >seq13508 Length=56402 Score = 109 bits (120), Expect = 3e-19 Identities = 77/88 (88%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 || |||||| | ||||||||| | | |||||||| |||||||||||||||||||||| Sbjct 25597 ATTAAAAATGA---TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACG 25653 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| |||||||||||||||||||| Sbjct 25654 ACGCTCTAACCAACTGAGCTAATGGGCC 25681 >seq8717 Length=91847 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 || ||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 72763 AAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 72822 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||||||||| Sbjct 72823 AACTGAGCTAATGGGCC 72839 >seq7450 Length=58714 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 14338 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 14279 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 14278 TGAGCTAATGGGCC 14265 >seq6203 Length=60790 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 42768 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 42709 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 42708 TGAGCTAATGGGCC 42695 Score = 109 bits (120), Expect = 3e-19 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 44698 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 44639 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 44638 TGAGCTAATGGGCC 44625 >seq53396 Length=1326 Score = 96.9 bits (106), Expect = 2e-15 Identities = 75/89 (84%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 |||||||| | ||||||||| | | || ||||| |||| ||||||||||||||||| Sbjct 911 ATAAAAAAGTATTATGGCCCATGCAGGTCTCAAACCTGCGACATTCGCGTTATTAGCACG 852 Query 11502 ACGCTCTRACCAACTGAGC-TAATGGGCC 11529 ||||||| ||||||||||| ||||||||| Sbjct 851 ACGCTCTAACCAACTGAGCTTAATGGGCC 823 >seq10605 Length=64131 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||| ||||| | | |||||||| || ||||| |||||||||||| ||||||| ||||| Sbjct 55255 TTGGTCCATGCAGGTCTCGAACCTGCGGCCTTCACGTTATTAGCACAACGCTCTAACCAA 55314 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||||| || Sbjct 55315 CTGAGCTAATGGTCC 55329 >seq16614 Length=44092 Score = 86.0 bits (94), Expect = 3e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 11471 TCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||||||| | ||||||||||||| |||| |||||||||||||||||||| Sbjct 32592 TCGAACCTGCGACCTTCACATTATTAGCACGACACTCTAACCAACTGAGCTAATGGGCC 32534 >seq30957 Length=11803 Score = 82.4 bits (90), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 3/90 (3%) Strand=Plus/Minus Query 11441 AATAAAA-AATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||| ||| || |||||||| | |||||| | | |||||| ||||||||||| Sbjct 5588 AATAAAATAATTAA--TGGCCCATACAGCTCTCGAACATGCAACCTTCACGTTATTAGCA 5531 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||| ||||||||||||||| |||| Sbjct 5530 CGACACTCTAACCAACTGAGCTAATTGGCC 5501 >seq18766 Length=40480 Score = 82.4 bits (90), Expect = 4e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||| |||||||||||| | ||||| |||||| Sbjct 27661 TGGCCCATGTAGGTCTCGAACCTGCGACCTTTGCGTTATTAGCATGGTGCTCTAACCAAC 27602 Query 11516 TGAGCTAATGGG 11527 ||||||||||| Sbjct 27601 AGAGCTAATGGG 27590 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261288307670464