Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq6171 109 6e-19 >seq6171 Length=36435 Score = 109 bits (120), Expect = 6e-19 Identities = 298/452 (66%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 21185 TTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGAT 21244 || ||||| || | |||||| || || || ||||| ||||| |||| | || Sbjct 5256 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAGC 5197 Query 21245 TCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAAT 21304 ||||| ||||||||||||| | || || | || || | | |||||| | || Sbjct 5196 TCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAAC 5137 Query 21305 AATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAAT 21364 |||||||| || ||||||||||| |||| || ||| || || | |||||| || | || Sbjct 5136 AATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCAGA 5077 Query 21365 TTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATA 21424 ||||||||| | || || ||||||| || || || |||| || Sbjct 5076 GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATAATT 5017 Query 21425 TTTATTA-----TCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATG 21479 | | |||| | || | || | || ||| | | |||||| | Sbjct 5016 CCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCA-AACTGT----AAAGCAAACACG 4962 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||||||||| ||||||||||| || || ||||| ||||| || || ||||| || | Sbjct 4961 CAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAG 4902 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGC-TCCTGAAAAGAAAATG 21598 ||||||| || | ||||| ||||||||||| || || | || ||| |||||||| Sbjct 4901 GCATTAACCCCCGTTTTTTCAACCAAAATATCGA-ACAGAAGCTTCCGCTGAAGAAAATC 4843 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTC 21630 || ||||| |||||| || || || || || Sbjct 4842 CCTTCAACACAAGCAAAAGCCACCAAGCGCTC 4811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531477513343360