Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_007151.1
Length=149622
Score E
Sequences producing significant alignments: (Bits) Value
seq16715 86.0 6e-12
seq6200 86.0 6e-12
>seq16715
Length=90750
Score = 86.0 bits (94), Expect = 6e-12
Identities = 159/232 (69%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825
||||| | ||||| ||||| | |||||||| | |||||| |||| | ||| |||
Sbjct 66691 ATGCAGATCTTTGTCAAAACCCTCACTGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 66632
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||| || | || || ||||| ||||| ||||| || || || ||
Sbjct 66631 ---GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGAC 66575
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| ||||| || || | | |||||| ||||| ||||| | | | | || || ||
Sbjct 66574 CAGCAAAGGCTGATCTTTGCCGGCAAGCAACTTGAAGACGGCCGGACCCTCGCTGATTAC 66515
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997
|||||||||||||| || ||| | || |||| || | ||| | || ||||
Sbjct 66514 AACATTCAAAAAGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAA 66463
>seq6200
Length=22545
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825
|| ||||| | || || ||||| |||| || || |||||||| | || | || ||
Sbjct 22297 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 22238
Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885
|||||||||||| | |||||| ||||| ||||| |||||||| || || ||
Sbjct 22237 TCCGACACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 22178
Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945
|| || | | |||| || ||| || || || || |||| | | | | ||||||
Sbjct 22177 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 22118
Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980
||||| || || || || ||| ||||||| || ||
Sbjct 22117 AACATCCAGAAGGAGTCAACTCTCCATCTCGTGCT 22083
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478281480462080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |