Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq16715 86.0 6e-12 seq6200 86.0 6e-12 >seq16715 Length=90750 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TCA 26825 ||||| | ||||| ||||| | |||||||| | |||||| |||| | ||| ||| Sbjct 66691 ATGCAGATCTTTGTCAAAACCCTCACTGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 66632 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||| || | || || ||||| ||||| ||||| || || || || Sbjct 66631 ---GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGAC 66575 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || ||||| || || | | |||||| ||||| ||||| | | | | || || || Sbjct 66574 CAGCAAAGGCTGATCTTTGCCGGCAAGCAACTTGAAGACGGCCGGACCCTCGCTGATTAC 66515 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||||||||| || ||| | || |||| || | ||| | || |||| Sbjct 66514 AACATTCAAAAAGAGTCCACTCTTCACTTGGTGCTCCGTCTTCGTGGTGGAA 66463 >seq6200 Length=22545 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | || || ||||| |||| || || |||||||| | || | || || Sbjct 22297 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACGATCACCCTAGAGGTTGAGTCT 22238 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||||||||| | |||||| ||||| ||||| |||||||| || || || Sbjct 22237 TCCGACACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAAGGGATTCCCCCAGAC 22178 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | | |||| || ||| || || || || |||| | | | | |||||| Sbjct 22177 CAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGATGGTCGTACTCTTGCCGACTAC 22118 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || || || || ||| ||||||| || || Sbjct 22117 AACATCCAGAAGGAGTCAACTCTCCATCTCGTGCT 22083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478281480462080