Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq6171 104 6e-17 >seq6171 Length=36435 Score = 104 bits (114), Expect = 6e-17 Identities = 305/468 (65%), Gaps = 3/468 (1%) Strand=Plus/Plus Query 22483 TTCGCGGAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTT 22542 |||||||| || | | || |||||| |||||||| |||||||| ||| || Sbjct 4805 TTCGCGGAGCGCTTGGTGGCTTTTGCTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTC 4864 Query 22543 TGTGCAATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAG 22602 ||| | || |||||| | |||||||| | | ||||| || |||| || ||||||||| Sbjct 4865 TGTTCGATATTTTGGTTGAAAAAACGGGGGTTAATGCCTGGATTAACCTTCTCAAATGAG 4924 Query 22603 TTAATTAGCCGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCAT 22662 |||||| |||| || ||| | || |||||||||||| |||| || | | | | Sbjct 4925 TTAATTTCAAGAGACGAAGGTTTGCACTGTGATTTTGCGTGTTTGCTTTA-CAGTTTGCT 4983 Query 22663 ATCATTCATAAACTTCCATATGAAACTGTACTTGATATTATTACAAATGCAGTTGAACTT 22722 | | || || | | || || | |||||| || |||| || || | Sbjct 4984 A--AGGACGAAGCTAACTGAGGAGCGAGTCAGGGGAATTATTGCAGATGCTGTGGAGATA 5041 Query 22723 GAACGTCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCA 22782 ||| | || | || || || | || ||| | || || |||| || | Sbjct 5042 GAAAGGGAGTTCGTGTGTGATGCTCTTCCTTGTGCTCTGGTGGGGATGAATGGAGATTTG 5101 Query 22783 ATGAGTACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAG 22842 ||||||| ||| || ||||||| || ||| | | || | | | ||||||| ||| Sbjct 5102 ATGAGTAAATACATAGAATTTGTCGCTGATAGATTGTTGGATGCTTTGGGTTATGACAAG 5161 Query 22843 CATTATAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACC 22902 || || | ||||||||||| |||||||| || ||| || |||| ||||| Sbjct 5162 ATGTACAATGCTCAGAATCCATTTGATTGGATGGAGCTGATTAGCCTACAAGGGAAGACT 5221 Query 22903 AATTTCTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 |||||||| || || |||||||| || || || || ||| ||| ||| Sbjct 5222 AATTTCTTTGAGAAGAGAGTTGGGGAGTATCAGAAGGCATCTGTGATG 5269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302290460985248