Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq16715 104 2e-17
seq25243 91.5 1e-13
seq32996 84.2 2e-11
>seq16715
Length=90750
Score = 104 bits (114), Expect = 2e-17
Identities = 159/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
|||||| | ||||| ||||| || ||||| || | |||||| |||| || || |
Sbjct 54339 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACTATTACCCTCGAGGTGGAAAGCTCT 54280
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
||||||||||| | || || |||||| |||||||| ||||| ||||| || ||
Sbjct 54279 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 54220
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| || |||||| | || ||||| | ||||||| || | | |||||| ||
Sbjct 54219 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 54160
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217
||||| || ||||| || ||||| | ||||| || | || |||||
Sbjct 54159 ATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAGGCTCAGGGGAGG 54113
Score = 100 bits (110), Expect = 2e-16
Identities = 148/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050
||||| | ||||| ||||| | |||||||| | || ||| |||| || || |
Sbjct 66691 ATGCAGATCTTTGTCAAAACCCTCACTGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 66632
Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110
|||||||| || | || || ||||| ||||| |||||||| || || || ||
Sbjct 66631 GACACCATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCAG 66572
Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170
|| || ||||| | | |||||||||||| ||||| | | | | | || ||||| |||
Sbjct 66571 CAAAGGCTGATCTTTGCCGGCAAGCAACTTGAAGACGGCCGGACCCTCGCTGATTACAAC 66512
Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200
||||||||||| || || |||| || |||
Sbjct 66511 ATTCAAAAAGAGTCCACTCTTCACTTGGTG 66482
>seq25243
Length=7086
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/142 (75%), Gaps = 2/142 (1%)
Strand=Plus/Plus
Query 24079 TTACC--GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCA 24136
||||| || ||||||||||||||||| ||||| ||||||||||||| | || || ||
Sbjct 5263 TTACCAGGATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACA 5322
Query 24137 ACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTT 24196
| | ||||||| ||| | | ||||| |||||||| |||||||| || ||||| |
Sbjct 5323 ATTGGAAGATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCT 5382
Query 24197 AGTGTTAAGATTGAGAGGAGGA 24218
|| | || | || ||||||
Sbjct 5383 TGTTCTGAGGCTCAGGGGAGGA 5404
>seq32996
Length=3898
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/199 (70%), Gaps = 4/199 (2%)
Strand=Plus/Minus
Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA--GGCCA 24048
||||| | |||||||| ||| | |||||||| | || ||| | ||||| || | ||
Sbjct 1772 ATGCAGATCTTTGTAAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCA 1713
Query 24049 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108
|| || || || | || || || ||| || || ||||| || ||||| || |
Sbjct 1712 --GATACAATTGACAACGTGAAGGCCAAAATTCAGGATAAGGAAGGGATTCCTCCAGACC 1655
Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168
| ||||||||||| | | |||||||||||| || |||| || | | | ||||| |
Sbjct 1654 AGCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGATTACA 1595
Query 24169 ACATTCAAAAAGAATCTAC 24187
| ||||| ||||| |||||
Sbjct 1594 ATATTCAGAAAGAGTCTAC 1576
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429602410507920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |