Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq16715 104 2e-17 seq25243 102 7e-17 seq32996 86.0 5e-12 seq6347 82.4 6e-11 >seq16715 Length=90750 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||||||||| ||||| ||||| || || ||| |||| ||| | Sbjct 66691 ATGCAGATCTTTGTCAAAACCCTCACTGGAAAGACAATCACCCTCGAGGTGGAAAGCTCA 66632 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || || || || || |||||| ||||| || || Sbjct 66631 GACACCATTG-ACAATGTTAAGGCTAAGATCCAGGACAAGGAAGGCATCCCCCCAGACCA 66573 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| || || | ||| ||||| ||| | ||||| | | ||| | || ||||| || Sbjct 66572 GCAAAGGCTGATCTTTGCCGGCAAGCAACTTGAAGACGGCCGGACCCTCGCTGATTACAA 66513 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTG 115495 ||||||||||||||| ||| | || ||||| Sbjct 66512 CATTCAAAAAGAGTCCACTCTTCACTTGGTG 66482 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||| ||||||||||| | || || || || |||||| |||| ||| | Sbjct 54339 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACTATTACCCTCGAGGTGGAAAGCTCT 54280 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| | ||||| || || || ||| || ||||| ||| |||| || || Sbjct 54279 GACAC-CATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCA 54221 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| | |||| ||| || || || || ||||||| | || |||||||||| || Sbjct 54220 GCAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAA 54161 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTGAG 115500 ||||| || || || || | ||| | |||||||| Sbjct 54160 TATTCAGAAGGAATCGACCCTTCATCTTGTGTTGAG 54125 >seq25243 Length=7086 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 |||||||||||| | || ||||||||| ||||| |||| ||| || |||||||| ||| Sbjct 5270 GATAAAGAAGGCATACCTCCTGATCAGCAGAGACTGATTTTTGCTGGGAAACAATTGGAA 5329 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| |||| |||| ||||| |||||||| ||||| || ||| | ||| | || || Sbjct 5330 GATGGTCGAACCCTGGCTGATTACAACATTCAGAAAGAATCAACTCTTCATCTTGTTCTG 5389 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 5390 AGGCTCAGGGGAGGAA 5405 >seq32996 Length=3898 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGA--GTCCA 115343 ||||| || ||||| || || || || ||||| ||||| ||| | ||| || || || Sbjct 1772 ATGCAGATCTTTGTAAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCA 1713 Query 115344 GCGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGAT 115402 | ||| | ||||| || || |||||| ||||| ||||| | || || Sbjct 1712 GATACAATT---GACAACGTGAAGGCCAAAATTCAGGATAAGGAAGGGATTCCTCCAGAC 1656 Query 115403 CAGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTAT 115462 ||||| ||||| || | ||| ||||| ||| | || |||| | ||| |||| ||||| Sbjct 1655 CAGCAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGATTAC 1596 Query 115463 AACATTCAAAAAGAGTCTACTATACAT 115489 || ||||| ||||||||||| ||||| Sbjct 1595 AATATTCAGAAAGAGTCTACCTTACAT 1569 >seq6347 Length=16439 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| || || | || || || ||||||||| | || ||| Sbjct 13015 ATGCAGATTTTTGTGAAGACATTGACAGGGAAGACCATTACCCTTGAGGTTGAGAGTTCT 12956 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 ||||| ||| |||| || || |||||| ||||| |||||| |||| ||| || Sbjct 12955 GACACCATTG-ACAATGTCAAGGCTAAAATTCAAGATAAGGAAGGCATCCCACCTGACCA 12897 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || | |||| ||| || ||||| | || |||| | || | || ||||| || Sbjct 12896 GCAGAGGTTGATTTTTGCTGGGAAACAGCTTGAGGATGGAAGGACTCTAGCAGATTACAA 12837 Query 115465 CATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||||||| || || ||| | ||| ||||| || Sbjct 12836 CATTCAAAAGGAATCAACTCTCCATTTGGTGCTG 12803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425013973463680