Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq43689 93.3 3e-14
seq16715 87.8 1e-12
seq6347 86.0 5e-12
>seq43689
Length=21515
Score = 93.3 bits (102), Expect = 3e-14
Identities = 159/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| | |||||||| |||| || || ||||||||||| || ||||||||||| ||
Sbjct 2432 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 2373
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | ||||| || || | || | || ||| ||||| ||
Sbjct 2372 AGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 2313
Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886
| ||||| ||||| || || || ||| || | | | | |||||| | |||
Sbjct 2312 ATACCCTCCTTGTCTTGGATCTTGGC--CTTGACATTGTCAATGGTGTCGGAGCTCTCAA 2255
Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| | ||| ||||| || ||||| || || || ||||||||||||||
Sbjct 2254 CCTCAAGGGTTATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 2206
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | ||| || || |||||||| || ||||||||||| || | ||| | |||||
Sbjct 1961 AGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCGTCC 1902
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|||||||| || || || | || | || ||| ||||| || | || || || ||
Sbjct 1901 TCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCC 1842
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || |||||| | | | | |||||| | ||| |||| |||||||
Sbjct 1841 TGGATCTTAGC--CTTCACGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGG 1784
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| |||||||| || || || || || ||||||||
Sbjct 1783 TCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 1750
>seq16715
Length=90750
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
||||| || ||||||||||| ||||||||||| |||| || | | || || | ||
Sbjct 65349 TGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGC 65408
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
|| || ||| | || |||| ||| |||||| || | ||||| ||||| ||| |
Sbjct 65409 TTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGAATCTTA 65468
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
|||||| | | | | || || |||| |||| ||||||||||| || |||
Sbjct 65469 GCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTC 65528
Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||||||||||||
Sbjct 65529 AAGGTCTTCACAAAAATCTGCAT 65551
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/214 (69%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| |||| || || |||||||| ||||| |||||||| || || | ||| | ||||
Sbjct 66480 AGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCAGCGAGGGTCCGGCCGTCT 66539
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842
|| | ||| ||||| ||| | || |||| || ||||| || | ||| || |||||
Sbjct 66540 TCAAGTTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 66599
Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901
|| || || ||| || | | | | ||||| | ||| || | |||||| |
Sbjct 66600 TGGATCTTAGC--CTTAACATTGTCAATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTG 66657
Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
| ||||| || || ||||||||||| ||||||||
Sbjct 66658 TCTTTCCAGTGAGGGTTTTGACAAAGATCTGCAT 66691
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|||| || ||||||||||| ||||||||||| |||| || | | || || | ||
Sbjct 53909 TGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCTACCATCTTCGAGCTGC 53968
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852
|| || ||| | || |||| ||| || || || | ||||| ||||| ||| |
Sbjct 53969 TTCCCTGCAAAGATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGAATCTTG 54028
Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912
||| || | | | | ||| || | ||||| |||| ||||||||||| || |||
Sbjct 54029 GCCTTAACGTTGTCAATAGTATCAGAGCTCTCCGCCTCCAAAGTGATGGTTTTCCCAGTC 54088
Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935
| || || ||||||||||||||
Sbjct 54089 AAGGTCTTCACAAAAATCTGCAT 54111
>seq6347
Length=16439
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/205 (70%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792
|| || |||||||||||||||||||||||||| || | ||| | | |||||||| |||
Sbjct 13269 TGGAGTGTGGACTCCTTTTGTATGTTGTAGTCAGCTAGAGTTCTTCCATCCTCCAACTGT 13328
Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850
|| || ||| | || | | ||| || || ||| | || || ||||| || |||
Sbjct 13329 TTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTT 13388
Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910
|| ||| || | | | | |||||| | ||| || | || || || || ||||
Sbjct 13389 GC--CTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCAAGAGTAATTGTCTTCCCGG 13446
Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935
||| ||||| ||||| ||||||||
Sbjct 13447 TCAAGGTTTTCACAAAGATCTGCAT 13471
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 404773690195360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |