Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq43689 93.3 3e-14 seq16715 87.8 1e-12 seq6347 86.0 5e-12 >seq43689 Length=21515 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| || || ||||||||||| || ||||||||||| || Sbjct 2432 CCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCGCA 2373 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | ||||| || || | || | || ||| ||||| || Sbjct 2372 AGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGGGA 2313 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| ||||| || || || ||| || | | | | |||||| | ||| Sbjct 2312 ATACCCTCCTTGTCTTGGATCTTGGC--CTTGACATTGTCAATGGTGTCGGAGCTCTCAA 2255 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| ||||| || ||||| || || || |||||||||||||| Sbjct 2254 CCTCAAGGGTTATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCAT 2206 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || |||||||| || ||||||||||| || | ||| | ||||| Sbjct 1961 AGGACAAGATGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCTAGGGTGCGGCCGTCC 1902 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 |||||||| || || || | || | || ||| ||||| || | || || || || Sbjct 1901 TCCAATTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGGGGGATTCCTTCCTTATCC 1842 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || |||||| | | | | |||||| | ||| |||| ||||||| Sbjct 1841 TGGATCTTAGC--CTTCACGTTGTCAATGGTGTCGGAGCTTTCCACCTCCAAAGTGATGG 1784 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | |||||||| || || || || || |||||||| Sbjct 1783 TCTTTCCGGTAAGAGTCTTAACGAAGATCTGCAT 1750 >seq16715 Length=90750 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 ||||| || ||||||||||| ||||||||||| |||| || | | || || | || Sbjct 65349 TGCAGAGTAGACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGC 65408 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| |||||| || | ||||| ||||| ||| | Sbjct 65409 TTCCCTGCAAAGATCAGCCTCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGAATCTTA 65468 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | || || |||| |||| ||||||||||| || ||| Sbjct 65469 GCCTTCACATTGTCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTC 65528 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || |||||||||||||| Sbjct 65529 AAGGTCTTCACAAAAATCTGCAT 65551 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || |||||||| ||||| |||||||| || || | ||| | |||| Sbjct 66480 AGCACCAAGTGAAGAGTGGACTCTTTTTGAATGTTGTAATCAGCGAGGGTCCGGCCGTCT 66539 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| ||||| ||| | || |||| || ||||| || | ||| || ||||| Sbjct 66540 TCAAGTTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCC 66599 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | | ||||| | ||| || | |||||| | Sbjct 66600 TGGATCTTAGC--CTTAACATTGTCAATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTG 66657 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | ||||| || || ||||||||||| |||||||| Sbjct 66658 TCTTTCCAGTGAGGGTTTTGACAAAGATCTGCAT 66691 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 |||| || ||||||||||| ||||||||||| |||| || | | || || | || Sbjct 53909 TGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCTACCATCTTCGAGCTGC 53968 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || |||| ||| || || || | ||||| ||||| ||| | Sbjct 53969 TTCCCTGCAAAGATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGAATCTTG 54028 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 ||| || | | | | ||| || | ||||| |||| ||||||||||| || ||| Sbjct 54029 GCCTTAACGTTGTCAATAGTATCAGAGCTCTCCGCCTCCAAAGTGATGGTTTTCCCAGTC 54088 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || |||||||||||||| Sbjct 54089 AAGGTCTTCACAAAAATCTGCAT 54111 >seq6347 Length=16439 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||||||||||||||| || | ||| | | |||||||| ||| Sbjct 13269 TGGAGTGTGGACTCCTTTTGTATGTTGTAGTCAGCTAGAGTTCTTCCATCCTCCAACTGT 13328 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || ||| | || | | ||| || || ||| | || || ||||| || ||| Sbjct 13329 TTACCGGCAAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTT 13388 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || ||| || | | | | |||||| | ||| || | || || || || |||| Sbjct 13389 GC--CTTGACATTGTCAATAGTGTCAGAGCTCTCAACCTCAAGAGTAATTGTCTTCCCGG 13446 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||| ||||| |||||||| Sbjct 13447 TCAAGGTTTTCACAAAGATCTGCAT 13471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404773690195360