Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_008194.1 Length=74483 Score E Sequences producing significant alignments: (Bits) Value seq63531 437 4e-118 seq63545 141 4e-29 >seq63531 Length=42858 Score = 437 bits (484), Expect = 4e-118 Identities = 580/800 (73%), Gaps = 9/800 (1%) Strand=Plus/Minus Query 65394 ACGTCATTCCCACCGGCTCTATCGCTCTGGACGGCGCTCTGGGCATCGGGGGGTACCCGA 65453 ||||||| | ||||| || | || || |||| ||| || |||||||| || || Sbjct 22961 ACGTCATCCAGACCGGGTCGGTGGCGCTCGACGTCGCGCTCGGCATCGGTGGCCTGCCCC 22902 Query 65454 GGGGCCGGGTGGTGGAAATCTACGGCCCAGAATCTTCAGGGAAGTCAACTCTATGTCTCC 65513 | ||||| | || || ||||||||||| || || || || ||| | || || ||| Sbjct 22901 GTGGCCGCATCGTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACGATCC 22842 Query 65514 ACGCGGTGGCCAATGCGCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCTGAGCACT 65573 |||| | ||||| || ||| ||||| |||| ||| || | ||||||||| |||||| Sbjct 22841 ACGCCATCGCCAACGCCCAGCGCGCCGGCGGCATCGCGGCGTTCATCGACGCGGAGCACG 22782 Query 65574 CCCTGGACCCTGAGTACGCCAAGGCGCTCGGTGTGGACCTCGACAACCTCGTGGTGGTTC 65633 |||| ||||| |||||||||||| ||||||||| ||| ||||| || | ||| | Sbjct 22781 CCCTCGACCCCGAGTACGCCAAGAAGCTCGGTGTCGACATCGACGCGCTGCTCGTGTCGC 22722 Query 65634 AGCCGGACACTGGCGAGCAGGCCCTGGAGATCGTTGACCTCCTCGTCAAGTCTGGCGAGC 65693 |||| ||||| | |||||||| || ||||||| ||| | |||||| || ||| | Sbjct 22721 AGCCCGACACAGCGGAGCAGGCGCTCGAGATCGCGGACATGCTCGTCCGCTCCGGCTCGA 22662 Query 65694 TGTCCATCGTCGTCGTTGACTCTGTGGCGGCCCTGGTGCCGCGCGCCGAGCTCGAAGGCG 65753 | | || ||||| | ||||| || ||||| || ||||| ||||||||| |||| |||| Sbjct 22661 TCGACCTCATCGTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCG 22602 Query 65754 ACATCGGGGACAGTCACGTCGGCCTGCACGCGCGCCTCATGTCGCAGGCCATGCGCAAGC 65813 | || || ||| |||||||| ||||| |||||||||||||| |||||| | ||||||| Sbjct 22601 AGATGGGCGACTCCCACGTCGGTCTGCAGGCGCGCCTCATGTCCCAGGCCCTCCGCAAGC 22542 Query 65814 TCACTGG-CACCATCTCCAGCACCAACACGCTGACGCTCTGGGTCAACCAGTTGCGCGAG 65872 || | || | |||| ||| | || || | ||| |||||||| |||||||| Sbjct 22541 TCGCCGGTGGGCTGAACCAG-ACCCAGACCACGATGATCTTCATCAACCAGCTGCGCGAG 22483 Query 65873 AAGATCGGCAACGTGGGCTACGGCCCGAACGAGACCACCACGGGCGGCAAGGCTTTGAGG 65932 |||||||| |||| || ||| | ||||||||| | ||||| ||||| ||| | Sbjct 22482 AAGATCGG---CGTGTTCTTCGGTTCCCCCGAGACCACGTCCGGCGGTAAGGCGCTGAAG 22426 Query 65933 TTCTACGCCTCAGTCCGCATGGATGTCCGTCGCATCGCCACCGAGAAGGAAGGCGATGAG 65992 |||||||| || ||||| | || |||| ||||||| || ||| || || Sbjct 22425 TTCTACGCGTCCGTCCGACTCGACATCCGGCGCATCGAGACGCTCAAGAGCGGGACCGAC 22366 Query 65993 GCTGTCGGCAACCGCACCCGGGTGAAGGTCGTCAAGAACAAGCTGGCCCCGCCGCACCGC 66052 || ||||||||||||||||| || |||||||||||||||||| |||| ||||| | Sbjct 22365 GCCGTCGGCAACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAG 22306 Query 66053 AACGCCGAGTTCTCCGTCGTGTACGGGGAGGGCATCTCGCGTGAGGTCGAACTCCTCGAC 66112 | ||||||||| | || ||||||| | |||||||||||| |||| | ||||||||| Sbjct 22305 CAGGCCGAGTTCGACATCCTGTACGGCGTGGGCATCTCGCGAGAGGGCTCGCTCCTCGAC 22246 Query 66113 CTGGCCGTGTCG--CAGGGCCTGGTGAAGAAGTCGGGCGCCTGGTTCAAGTACGGGGACA 66170 | | |||||| || ||| | || ||||||||||| ||||||| || |||| | | Sbjct 22245 TT--CGGTGTCGACCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCTACGACGGCG 22188 Query 66171 AGAACGTCGCTCAGGGCAAG 66190 | | ||| ||||||||| Sbjct 22187 ACCAGCTCGGGCAGGGCAAG 22168 >seq63545 Length=90175 Score = 141 bits (156), Expect = 4e-29 Identities = 217/306 (71%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 59266 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCC 59325 || |||| ||| ||||| ||||| |||||||| | ||| || |||| ||||| || Sbjct 74069 GTGGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCG 74010 Query 59326 AACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGAC 59382 ||||||||| ||| ||||| | ||| |||| |||| ||| ||| ||| Sbjct 74009 AACTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGAC 73950 Query 59383 GGCGACGCCACATTCCTCCGCTGC-ACCATCTGGCGCGACGCCGCCGAGAACGTGGCGGA 59441 |||||||| |||||||| ||| | | | |||||||| ||||||| ||||||||| Sbjct 73949 GGCGACGCGCTGTTCCTCCG-TGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGCGGG 73891 Query 59442 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 59501 || ||| ||| |||||||||| ||| || |||| |||||||||| | | Sbjct 73890 CTCACTGACGAAGGGCTCCCGCGTCATCGCGCAGGGTCGCCTCCGTCAGCGCTCCTACCA 73831 Query 59502 GACCAAGGAGGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 59561 | | |||||| | ||||||| ||||||| | ||||| |||||||||||||| || Sbjct 73830 GGACCGTGAGGGCCAGCAGCGCACGAGCATCGAGCTCGAGGTCGACGAGATCGGCCCCTC 73771 Query 59562 GCTGCG 59567 ||| || Sbjct 73770 GCTCCG 73765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238035963290176