Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq6171 205 1e-47
seq12218 91.5 2e-13
seq13056 89.7 6e-13
seq11914 87.8 2e-12
seq13657 86.0 7e-12
seq7251 86.0 7e-12
seq33622 84.2 2e-11
seq352 84.2 2e-11
seq62522 82.4 8e-11
seq18198 82.4 8e-11
seq16160 82.4 8e-11
seq11990 82.4 8e-11
seq10356 82.4 8e-11
>seq6171
Length=36435
Score = 205 bits (226), Expect = 1e-47
Identities = 590/893 (66%), Gaps = 15/893 (2%)
Strand=Plus/Minus
Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862
|| || || ||||||||| | || ||||||||||| ||||| |||| | |||
Sbjct 5256 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAGC 5197
Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920
| || | | | |||||||| || || || ||| ||| ||| | | |||
Sbjct 5196 TCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAAC 5137
Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980
||||||||||| |||||||||||||| | | ||||||||| | |||||| || | |||
Sbjct 5136 AATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCAGA 5077
Query 92981 CGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039
| ||| || ||||| || || ||| || | || || | || || ||| | ||
Sbjct 5076 -GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATAAT 5018
Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCACGCAA 93098
| | | |||| || | || || || | | || |||| | || |||||||
Sbjct 5017 TCCCCTGACTCG-CTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCAA 4959
Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158
| || || ||||||||||||| ||| || |||||||| ||| ||||| || || |
Sbjct 4958 AATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCA 4899
Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218
| || ||||| || | ||||||||| ||| || || || || || || ||||
Sbjct 4898 TTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCTT 4839
Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278
| || ||||| ||||| | || || || ||| || |||| || ||||||
Sbjct 4838 CAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGA---ACCATCGATCCAAC 4782
Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC-GTTAAATAGG 93337
| ||||| | || || || | || |||||| | || ||||| || || |
Sbjct 4781 GAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACAATT 4722
Query 93338 TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397
| ||| ||||| ||||| |||||| | || | | || | ||||| || |||
Sbjct 4721 TGCTCT-TTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGAA 4663
Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457
|||| |||||| || || |||||||| || |||||| | || || | | ||| ||
Sbjct 4662 TGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGACG 4603
Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517
|||| || || || |||| || || || || || || || || ||||||||
Sbjct 4602 TCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAG 4543
Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAG 93576
|| | | ||| | || |||||| | ||| | | | || || ||||| | |||
Sbjct 4542 GCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACGAT-T 4484
Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636
||| || |||||||||||||| || ||||| || ||||| ||||| ||||||||
Sbjct 4483 ATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACAT 4424
Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTA 93688
||||| || | | |||| |||||||| || || ||| || |||| ||||||
Sbjct 4423 TTCCCAAATCTGTGGATACTGAATTGGGAACAT-ACAGAATCGATCTGGGTTA 4372
>seq12218
Length=136658
Score = 91.5 bits (100), Expect = 2e-13
Identities = 85/106 (80%), Gaps = 4/106 (4%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| |||||||| | | ||||
Sbjct 108879 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 108820
Query 126323 GTGGGTTCGAACCCCACACCTGACA--AATTATTATTGGAATTTTT 126366
|||||||| || ||||| |||||| ||||| ||| | |||||
Sbjct 108819 GTGGGTTCAAATCCCACTTCTGACATTTTTTATTTTTGCATTTTTT 108774
>seq13056
Length=14058
Score = 89.7 bits (98), Expect = 6e-13
Identities = 79/98 (81%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 4749 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 4806
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365
||| || |||||| ||| ||| || |||| | |||||
Sbjct 4807 TTCAAATCCCACAGCTGTCAATTTTTTATGTGCATTTT 4844
Score = 89.7 bits (98), Expect = 6e-13
Identities = 79/98 (81%), Gaps = 2/98 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 8074 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 8131
Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365
||| || |||||| ||| ||| || |||| | |||||
Sbjct 8132 TTCAAATCCCACAGCTGTCAATTTTTTATGTGCATTTT 8169
>seq11914
Length=14339
Score = 87.8 bits (96), Expect = 2e-12
Identities = 81/102 (79%), Gaps = 2/102 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 1381 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 1440
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTT 126364
|||||||| || ||||| |||||| ||||| || |||||
Sbjct 1441 GTGGGTTCAAATCCCACTTCTGACATTTTATTTTTTTAATTT 1482
>seq13657
Length=45188
Score = 86.0 bits (94), Expect = 7e-12
Identities = 76/93 (82%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 9683 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 9740
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||| || |||||| ||| | |||| |||||
Sbjct 9741 GGGTTCAAATCCCACAGCTGTC-AATTTTTATT 9772
Score = 86.0 bits (94), Expect = 7e-12
Identities = 76/93 (82%), Gaps = 3/93 (3%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 19793 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 19850
Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357
|||||| || |||||| ||| | |||| |||||
Sbjct 19851 GGGTTCAAATCCCACAGCTGTC-AATTTTTATT 19882
>seq7251
Length=41982
Score = 86.0 bits (94), Expect = 7e-12
Identities = 82/103 (80%), Gaps = 3/103 (3%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323
|||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | |||
Sbjct 24804 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 24745
Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366
||||||| || ||||| ||||||| || || || |||||||
Sbjct 24744 TGGGTTCAAATCCCACTTCTGACAATTTCTT-TTCCAATTTTT 24703
>seq33622
Length=20086
Score = 84.2 bits (92), Expect = 2e-11
Identities = 81/103 (79%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 6689 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 6748
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365
|||||||| || ||||| |||||| || ||||| | ||||
Sbjct 6749 GTGGGTTCAAATCCCACTTCTGACATTTTTTTATTTTATTTTT 6791
>seq352
Length=259010
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/90 (81%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322
||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||
Sbjct 203903 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 203962
Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA 126352
|||||||| || ||||| |||||||| ||
Sbjct 203963 GTGGGTTCAAATCCCACTTCTGACAAAATA 203992
>seq62522
Length=5408
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 88 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 31
Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351
|||||| || |||||| ||| ||| ||
Sbjct 30 GGGTTCAAATCCCACAGCTGTCAATTT 4
>seq18198
Length=184840
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 19166 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19109
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
||| || |||||| ||| ||| || ||
Sbjct 19108 TTCAAATCCCACAGCTGTCAATTTTTT 19082
>seq16160
Length=35804
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 23061 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 23004
Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351
|||||| || |||||| ||| ||| ||
Sbjct 23003 GGGTTCAAATCCCACAGCTGTCAATTT 22977
>seq11990
Length=17322
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 788 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 845
Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354
||| || |||||| ||| || |||||
Sbjct 846 TTCAAATCCCACAGCTGTCATTTTATT 872
>seq10356
Length=13818
Score = 82.4 bits (90), Expect = 8e-11
Identities = 82/103 (80%), Gaps = 5/103 (5%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 12945 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 12888
Query 126328 TTCGAACCCCACACCTGACAAAT--TATTATTGGA-ATTTTTG 126367
||| || |||||| ||| || | | || ||||| |||||||
Sbjct 12887 TTCAAATCCCACAGCTGTCATTTTGTTTTTTTGGACATTTTTG 12845
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556417650175360
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