Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq6171 205 1e-47 seq12218 91.5 2e-13 seq13056 89.7 6e-13 seq11914 87.8 2e-12 seq13657 86.0 7e-12 seq7251 86.0 7e-12 seq33622 84.2 2e-11 seq352 84.2 2e-11 seq62522 82.4 8e-11 seq18198 82.4 8e-11 seq16160 82.4 8e-11 seq11990 82.4 8e-11 seq10356 82.4 8e-11 >seq6171 Length=36435 Score = 205 bits (226), Expect = 1e-47 Identities = 590/893 (66%), Gaps = 15/893 (2%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 || || || ||||||||| | || ||||||||||| ||||| |||| | ||| Sbjct 5256 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAGGCTAATCAGC 5197 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 | || | | | |||||||| || || || ||| ||| ||| | | ||| Sbjct 5196 TCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAAC 5137 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGA 92980 ||||||||||| |||||||||||||| | | ||||||||| | |||||| || | ||| Sbjct 5136 AATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCAGA 5077 Query 92981 CGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | ||| || ||||| || || ||| || | || || | || || ||| | || Sbjct 5076 -GCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATAAT 5018 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACG-ACATAATTGTACATTAAGCACGCAA 93098 | | | |||| || | || || || | | || |||| | || ||||||| Sbjct 5017 TCCCCTGACTCG-CTCCTCAGTTAGCTTCGTCCTTAGCAAACTGTAAAGCAAACACGCAA 4959 Query 93099 AGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTA 93158 | || || ||||||||||||| ||| || |||||||| ||| ||||| || || | Sbjct 4958 AATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGGCA 4899 Query 93159 ACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTT 93218 | || ||||| || | ||||||||| ||| || || || || || || |||| Sbjct 4898 TTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCCTT 4839 Query 93219 CCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATT 93278 | || ||||| ||||| | || || || ||| || |||| || |||||| Sbjct 4838 CAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGA---ACCATCGATCCAAC 4782 Query 93279 TTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGC-GTTAAATAGG 93337 | ||||| | || || || | || |||||| | || ||||| || || | Sbjct 4781 GAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACAATT 4722 Query 93338 TAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAA 93397 | ||| ||||| ||||| |||||| | || | | || | ||||| || ||| Sbjct 4721 TGCTCT-TTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGAA 4663 Query 93398 TGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACT 93457 |||| |||||| || || |||||||| || |||||| | || || | | ||| || Sbjct 4662 TGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGACG 4603 Query 93458 TCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaa 93517 |||| || || || |||| || || || || || || || || |||||||| Sbjct 4602 TCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAAG 4543 Query 93518 GCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAG 93576 || | | ||| | || |||||| | ||| | | | || || ||||| | ||| Sbjct 4542 GCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACGAT-T 4484 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACAT 93636 ||| || |||||||||||||| || ||||| || ||||| ||||| |||||||| Sbjct 4483 ATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACAT 4424 Query 93637 ATCCCATATGTCTTGATATTGAATTGGAAATATGACA-AAACGATTAGGGTTA 93688 ||||| || | | |||| |||||||| || || ||| || |||| |||||| Sbjct 4423 TTCCCAAATCTGTGGATACTGAATTGGGAACAT-ACAGAATCGATCTGGGTTA 4372 >seq12218 Length=136658 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/106 (80%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||||| | | |||| Sbjct 108879 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGAGC 108820 Query 126323 GTGGGTTCGAACCCCACACCTGACA--AATTATTATTGGAATTTTT 126366 |||||||| || ||||| |||||| ||||| ||| | ||||| Sbjct 108819 GTGGGTTCAAATCCCACTTCTGACATTTTTTATTTTTGCATTTTTT 108774 >seq13056 Length=14058 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 4749 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 4806 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| ||| || |||| | ||||| Sbjct 4807 TTCAAATCCCACAGCTGTCAATTTTTTATGTGCATTTT 4844 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/98 (81%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 8074 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 8131 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 ||| || |||||| ||| ||| || |||| | ||||| Sbjct 8132 TTCAAATCCCACAGCTGTCAATTTTTTATGTGCATTTT 8169 >seq11914 Length=14339 Score = 87.8 bits (96), Expect = 2e-12 Identities = 81/102 (79%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 1381 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 1440 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTT 126364 |||||||| || ||||| |||||| ||||| || ||||| Sbjct 1441 GTGGGTTCAAATCCCACTTCTGACATTTTATTTTTTTAATTT 1482 >seq13657 Length=45188 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/93 (82%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 9683 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 9740 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| | |||| ||||| Sbjct 9741 GGGTTCAAATCCCACAGCTGTC-AATTTTTATT 9772 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/93 (82%), Gaps = 3/93 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 19793 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 19850 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATTATT 126357 |||||| || |||||| ||| | |||| ||||| Sbjct 19851 GGGTTCAAATCCCACAGCTGTC-AATTTTTATT 19882 >seq7251 Length=41982 Score = 86.0 bits (94), Expect = 7e-12 Identities = 82/103 (80%), Gaps = 3/103 (3%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | ||| Sbjct 24804 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGCG 24745 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTT 126366 ||||||| || ||||| ||||||| || || || ||||||| Sbjct 24744 TGGGTTCAAATCCCACTTCTGACAATTTCTT-TTCCAATTTTT 24703 >seq33622 Length=20086 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/103 (79%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 6689 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 6748 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTT 126365 |||||||| || ||||| |||||| || ||||| | |||| Sbjct 6749 GTGGGTTCAAATCCCACTTCTGACATTTTTTTATTTTATTTTT 6791 >seq352 Length=259010 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 203903 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGTAAGAGGGC 203962 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTA 126352 |||||||| || ||||| |||||||| || Sbjct 203963 GTGGGTTCAAATCCCACTTCTGACAAAATA 203992 >seq62522 Length=5408 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 88 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 31 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 30 GGGTTCAAATCCCACAGCTGTCAATTT 4 >seq18198 Length=184840 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 19166 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 19109 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| ||| || || Sbjct 19108 TTCAAATCCCACAGCTGTCAATTTTTT 19082 >seq16160 Length=35804 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 23061 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 23004 Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351 |||||| || |||||| ||| ||| || Sbjct 23003 GGGTTCAAATCCCACAGCTGTCAATTT 22977 >seq11990 Length=17322 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 788 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 845 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || ||||| Sbjct 846 TTCAAATCCCACAGCTGTCATTTTATT 872 >seq10356 Length=13818 Score = 82.4 bits (90), Expect = 8e-11 Identities = 82/103 (80%), Gaps = 5/103 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 12945 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 12888 Query 126328 TTCGAACCCCACACCTGACAAAT--TATTATTGGA-ATTTTTG 126367 ||| || |||||| ||| || | | || ||||| ||||||| Sbjct 12887 TTCAAATCCCACAGCTGTCATTTTGTTTTTTTGGACATTTTTG 12845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556417650175360