Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq16715 113 3e-20 seq32996 100 2e-16 seq15487 95.1 9e-15 seq6347 82.4 5e-11 >seq16715 Length=90750 Score = 113 bits (124), Expect = 3e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| || || ||||| || |||||| | || |||| | | Sbjct 54339 ATGCAAATCTTTGTCAAAACCTTGACTGGCAAGACTATTACCCTCGAGGTGGAAAGCTCT 54280 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || |||||||| | ||| | |||| Sbjct 54279 GACACCATCGACAATGTTAAGGCCAAGATTCAGGACAAAGAGGGCATCCCTCCAGACCAG 54220 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| || || | |||||| || || |||||||||||||| Sbjct 54219 CAAAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACACTGGCCGATTACAAT 54160 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||||||||| || |||||| | || || Sbjct 54159 ATTCAGAAGGAATCGACCCTTCATCTTGTGTT 54128 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || || || ||||| || |||||| | || |||| | | Sbjct 65779 ATGCAAATCTTCGTGAAGACCTTGACTGGCAAGACTATTACCCTTGAGGTGGAAAGCTCC 65720 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | ||||| ||| ||| || ||||||||| | || | | || Sbjct 65719 GACACCATTGACAACGTTAAGGCAAAGATTCAGGACAAAGAGGGTATCCCACCAGATCAG 65660 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || ||||||||||| || | |||||| || || | |||||||||||| Sbjct 65659 CAAAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGAAGGACATTAGCCGATTACAAT 65600 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATT 22045 |||||||||||||| || |||||| | || || Sbjct 65599 ATTCAGAAGGAATCGACCCTTCATCTTGTGTT 65568 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || ||||| | ||| | |||| |||||||| |||||||| || |||||||| ||| Sbjct 54930 GACAAGGAGGGCATCCCTCCAGACCAGCAGAGACTGATCTTTGCCGGAAAACAACTTGAA 54871 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| | || ||||||||||| |||||||| || |||||||| |||| | Sbjct 54870 GATGGCCGTACTCTCGCTGATTACAATATCCAGAAGGAGTCCACTCTTCACTTGGTGCTC 54811 Query 22047 CGTTTACGAGGAGG 22060 ||| | || || || Sbjct 54810 CGTCTCCGCGGTGG 54797 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || ||||| | ||| | |||| |||||||| |||||||| || |||||||| ||| Sbjct 55133 GACAAGGAGGGCATCCCTCCAGACCAGCAGAGACTGATCTTTGCCGGAAAACAACTTGAA 55074 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCATATGGTATTA 22046 ||| ||| | | ||||||||||| |||||||| || |||||||| |||| | Sbjct 55073 GATGGCCGTACTCTCACTGATTACAATATCCAGAAGGAGTCCACTCTTCACTTGGTGCTC 55014 Query 22047 CGTTTACGAGGAGG 22060 ||| | || || || Sbjct 55013 CGTCTCCGCGGTGG 55000 >seq32996 Length=3898 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| |||| ||||| || || || || ||||| |||| || || Sbjct 1544 ATGCAAATATTTGTTAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1485 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || |||| ||| || || || |||||| | ||| | |||| Sbjct 1484 GATACTATCGACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAGACCAG 1425 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| || ||||| || ||| || || |||| |||||||| Sbjct 1424 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCGGATTACAAC 1365 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| ||||| || || || Sbjct 1364 ATTCAGAAAGAATCAACCCTGCA 1342 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | || || || ||||| ||| | ||| ||| || Sbjct 1772 ATGCAGATCTTTGTAAAGACACTTACTGGAAAGACCATCACCCTTGAAGTTGAAAGTTCA 1713 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| |||||| ||||| || || | ||| | |||| Sbjct 1712 GATACAATTGACAACGTGAAGGCCAAAATTCAGGATAAGGAAGGGATTCCTCCAGACCAG 1653 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| |||||||| ||||| ||||| || ||| || || |||| ||||||||| Sbjct 1652 CAGAGACTGATCTTTGCCGGCAAGCAACTTGAGGATGGAAGGACCCTGGCTGATTACAAT 1593 Query 22014 ATTCAGAAGGAATCTAC 22030 |||||||| || ||||| Sbjct 1592 ATTCAGAAAGAGTCTAC 1576 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || ||||| || || ||||| |||| || || Sbjct 1316 ATGCAAATTTTTGTCAAGACTTTGACGGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 1257 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | || ||| ||| ||||| |||||| | || | |||| Sbjct 1256 GATACCATTGACAACGTCAAAGCAAAGATTCAAGATAAGGAGGGTATTCCCCCAGACCAG 1197 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| || ||||| || ||| || || |||| |||||||| Sbjct 1196 CAGAGATTGATCTTTGCTGGAAAGCAACTTGAGGATGGAAGGACCTTGGCAGATTACAAC 1137 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 |||||||| ||||| || || || Sbjct 1136 ATTCAGAAAGAATCAACCCTGCA 1114 >seq15487 Length=17016 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || ||||| || || || || ||||| |||| || || Sbjct 16816 ATGCAAATATTTGTCAAGACATTGACAGGGAAGACAATTACTTTGGAGGTTGAGAGTTCA 16757 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || |||| ||| || || || |||||| | ||| |||||| Sbjct 16756 GATACTATCAACAATGTTAAAGCAAAGATCCAAGACAAGGAGGGTATTCCTCCAAACCAG 16697 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||| | ||||||||||| | ||||| |||||| || || |||| |||||||| Sbjct 16696 CAGAGATTGATCTTTGCTGGAGAGCAACTTGAAGATGGAAGGACCTTGGCAGATTACAAC 16637 Query 22014 ATTCAGAAGGAATCTAC 22030 |||||||| ||||| || Sbjct 16636 ATTCAGAAAGAATCAAC 16620 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21927 GATAAAGAGGGTGTACCTGTAAACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAA 21986 || || |||||| | ||| |||||| |||||| | ||||||||||| | ||||| ||| Sbjct 16586 GACAAGGAGGGTATTCCTCCAAACCAGCAGAGATTGATCTTTGCTGGAGAGCAACTTGAA 16527 Query 21987 GATTTAAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 22036 ||| || || |||| |||||||| |||||||| ||||| || || || Sbjct 16526 GATGGAAGGACCTTGGCAGATTACAACATTCAGAAAGAATCAACCCTGCA 16477 >seq6347 Length=16439 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| || || || || || |||||| | || ||| | || Sbjct 13243 ATGCAGATCTTTGTGAAAACCTTGACTGGAAAGACTATTACCCTTGAGGTTGAAAGCTCA 13184 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| ||||||| || || ||||| | ||| | |||| Sbjct 13183 GACACTATTGACAATGTTAAGGCAAAAATTCAGGACAAGGAGGGCATTCCTCCAGACCAG 13124 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 || || | || |||||||| || ||||| || ||| ||| | || || |||||| Sbjct 13123 CAAAGGTTGATTTTTGCTGGAAAGCAACTTGAGGATGGTCGTACTCTTGCTGACTACAAT 13064 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||| || || || || Sbjct 13063 ATTCAGAAGGAGTCCACCCTCCA 13041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357846929177056