Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq6171 122 2e-22 >seq6171 Length=36435 Score = 122 bits (134), Expect = 2e-22 Identities = 346/527 (66%), Gaps = 16/527 (3%) Strand=Plus/Plus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| || |||||||| |||||||| || |||||||| || ||||||||| Sbjct 4538 CTTGCCTTTTTTGCCGCCTCAGACGGCATCGTTTTAGAGAACCTCGCAGGAAGGTTCATG 4597 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||| || ||| ||||||||| ||| ||||| || ||||| || ||||| ||||| Sbjct 4598 AAAGACGTCCAGGTTGCTGAGGCGCG-TGCTTTCTATGGGTTCCAAATCGCCATTGAGAA 4656 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | || || ||| ||||| ||| | | ||||||| |||| | | ||| Sbjct 4657 TATCCATTCCGAGATGTACAGTTTGCTGTTGGAGTCGTACATAAAGGATTCTGACGA--- 4713 Query 42602 TAACGGGC----TGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || | || ||||| || || ||||| || || || | | ||||||||| | | Sbjct 4714 -AAAGAGCAAATTGTTCCGTGCAATCGAGACCATCCCTTGTGTTGAAAAGAAGGCGAAAT 4772 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| || |||||||| || |||| ||| |||| ||| | |||| || ||| Sbjct 4773 GGGCCCTTCGTTGGATCGATGGTTCCGA---AACTTTCGCGGAGCGCTTGGTGGCTTTTG 4829 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || || || || |||||| || |||| || || || ||| | || | Sbjct 4830 CTTGTGTTGAAGGGATTTTCTTCAGCGGAAGCTTCTGTTCGATATTTTGGTTGAAAAAAC 4889 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || || ||||| ||| | |||||||| || || | || || ||||| || ||| Sbjct 4890 GGGGGTTAATGCCTGGATTAACCTTCTCAAATGAGTTAATTTCAAGAGACGAAGGTTTGC 4949 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 | | || ||||| || | || | | || || ||| |||| | |||||| Sbjct 4950 ACTGTGATTTTGCGTGTTTGCTTTAC---AGTTTGCTAAGGACGAAGCTAACTGAGGAGC 5006 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTC 42944 | ||| ||| || || | || || |||||||| || | ||||||| Sbjct 5007 GAGTCAGGGGAATTATTGCAGATGCTGTGGAGATAGAAAGGGAGTTC 5053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943587694864640