Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq16715 93.3 3e-14 seq25243 87.8 1e-12 >seq16715 Length=90750 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| || ||| |||||||| || ||||||||||| |||||||| || Sbjct 65552 ACCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGC 65611 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || |||| | | || ||||| |||||||| ||||| |||| | |||||||| | Sbjct 65612 TAA-TGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGATCTGGTG 65670 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051 | | | |||||||||| ||| ||| ||||| Sbjct 65671 GGATACCCTCTTTGTCCTGAATCTTTGCCTTAA 65703 Score = 87.8 bits (96), Expect = 1e-12 Identities = 164/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| || |||| || ||| |||||||| || ||||||||||| |||||||| || Sbjct 54112 ACCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGC 54171 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | |||| | | || ||||| ||||| || ||||| |||| | ||||| || | Sbjct 54172 C-AGTGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGAG 54230 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTA--ATGGAACTC-ACACTATCAGTAGATT 34075 | | || |||||||||| ||| || |||| || | || | | |||| || || Sbjct 54231 GGATGCCCTCTTTGTCCTGAATCTTGGCCTTAACATTG---TCGATGGTGTCAG-AGCTT 54286 Query 34076 CGCA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || |||| || || || || || || | ||||| |||||||||||||| Sbjct 54287 TCCACCTCGAGGGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 54339 >seq25243 Length=7086 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| || |||| ||| || |||||||| || || ||||||||||||||||| ||| Sbjct 5403 CCTCCCCTGAGCCTCAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCC 5344 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 | ||| | || |||||||| || || ||||| ||||| | ||||||||| Sbjct 5343 AGGGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATC 5291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396754317298528