Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_009503.1
Length=124121
Score E
Sequences producing significant alignments: (Bits) Value
seq16715 93.3 3e-14
seq25243 87.8 1e-12
>seq16715
Length=90750
Score = 93.3 bits (102), Expect = 3e-14
Identities = 114/153 (75%), Gaps = 2/153 (1%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| || |||| || ||| |||||||| || ||||||||||| |||||||| ||
Sbjct 65552 ACCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGC 65611
Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
|| |||| | | || ||||| |||||||| ||||| |||| | |||||||| |
Sbjct 65612 TAA-TGTCCTTCCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTTTGCTGATCTGGTG 65670
Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAA 34051
| | | |||||||||| ||| ||| |||||
Sbjct 65671 GGATACCCTCTTTGTCCTGAATCTTTGCCTTAA 65703
Score = 87.8 bits (96), Expect = 1e-12
Identities = 164/233 (70%), Gaps = 10/233 (4%)
Strand=Plus/Plus
Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959
|||||| || |||| || ||| |||||||| || ||||||||||| |||||||| ||
Sbjct 54112 ACCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGC 54171
Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018
| | |||| | | || ||||| ||||| || ||||| |||| | ||||| || |
Sbjct 54172 C-AGTGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGAG 54230
Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTA--ATGGAACTC-ACACTATCAGTAGATT 34075
| | || |||||||||| ||| || |||| || | || | | |||| || ||
Sbjct 54231 GGATGCCCTCTTTGTCCTGAATCTTGGCCTTAACATTG---TCGATGGTGTCAG-AGCTT 54286
Query 34076 CGCA-TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127
|| |||| || || || || || || | ||||| ||||||||||||||
Sbjct 54287 TCCACCTCGAGGGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 54339
>seq25243
Length=7086
Score = 87.8 bits (96), Expect = 1e-12
Identities = 87/113 (77%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960
||||| || |||| ||| || |||||||| || || ||||||||||||||||| |||
Sbjct 5403 CCTCCCCTGAGCCTCAGAACAAGATGAAGAGTTGATTCTTTCTGAATGTTGTAATCAGCC 5344
Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013
| ||| | || |||||||| || || ||||| ||||| | |||||||||
Sbjct 5343 AGGGTTCGACCATCTTCCAATTGTTTCCCAGCAAAAATCAGTCTCTGCTGATC 5291
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396754317298528
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |