Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_009816.1 Length=70579 Score E Sequences producing significant alignments: (Bits) Value seq63522 268 4e-67 >seq63522 Length=32345 Score = 268 bits (296), Expect = 4e-67 Identities = 574/838 (68%), Gaps = 26/838 (3%) Strand=Plus/Minus Query 60063 CCGTACACCTTATTGATGTCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCA 60122 ||||| ||||| | || ||| || || ||||| ||| ||| |||| | | ||| || Sbjct 15450 CCGTAGACCTTCTCGACGTCGTACGGCGAGAACAGGTACATGTCCTCGTTGTTCTTCGCG 15391 Query 60123 AGGCGGAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTC 60182 || |||||||| || ||||||| || || |||||||| ||||| || ||||||||| Sbjct 15390 AGCTCGAACGTGATGTCCGGAACGACGACACCGAGGGAGAGCGTCTTGATGCGGATCTTC 15331 Query 60183 TCGTCGGCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGGTGTGCGTTC 60242 ||||| ||||| || |||||||| || |||||| | |||||| |||||||| ||| | Sbjct 15330 TCGTCCGCGTTCTCGCGCTTGGTGTCGAGGAACTTCATGATGTCCGGGTGGTGGGCGCTG 15271 Query 60243 AAATATACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCT 60302 | || ||||| || || ||||| | ||||| || ||||| | |||||||||| ||| Sbjct 15270 AGGTAGACCGCACCGGCACCCTGACGCGCACCGAGCTGGTTCGCGTAGGAGAAGGAGTCT 15211 Query 60303 TCTAGAATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGACC--CTTAATCG 60360 || || | ||||||||| ||||||| || |||| ||| ||||||| | ||| |||| Sbjct 15210 TCCAGCAGCTTCATCACGGGGATGATGCCCGAGGACTG--GTTCTCGATCTGCTTGATCG 15153 Query 60361 GAGCTCCTGCCTCGCGGAGGTTGGAGAATCCAATGCCGACTCCGCCACCACGCTTAGACA 60420 |||| || ||||| |||| |||||||| | | | || ||||| || ||||| || | Sbjct 15152 GAGCGCCGGCCTCACGGATGTTGGAGAGGAGCAGGGCCACGCCGCCGCCGCGCTTCGAGA 15093 Query 60421 GCTGGAGAGAGTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGA 60480 |||| || ||| | | | || ||| ||| ||||| |||||| | ||||| Sbjct 15092 GCTGCAGCGAGGAGTTGATGCCGCGCGAGATCGACTCCATGTTGTCCTCGATGCGGAGGA 15033 Query 60481 TGAAGCATGATACTGGCTTGCCTGCG-TCGAGAAGCCCCGCGTTGAGGAAGGTCGGAGTT 60539 |||||| || || | | ||| ||| | | | | | ||||||||| || || || Sbjct 15032 GGAAGCAGGAGACGAGTTCGCC-GCGCTGGGCCTTCGCGGTGTTGAGGAACGTGGGGGTC 14974 Query 60540 GCAGGCTGGAAGATTCCCTTGATAATGAGATCCACAAGG--GA-CTC-AGCGTGCTCGAA 60595 || ||||||||| || ||| || || || ||| || | | ||| |||||| Sbjct 14973 GCGGGCTGGAAGCGGCCGGCGATGATCTCCTCGACGAGGTCGATCGCGAGC-TGCTCGTT 14915 Query 60596 G-TCTTCGCTGTAGTGGATGGCCGTGAGTACCACTCGATCTTCGTAGCGCTCGTAATAGC 60654 | || ||| | || ||| || | || || || || ||| |||| ||| |||| Sbjct 14914 GCCCTGCGC-CAGGCCGAGGGCGGTCATCACGACGCGGTCCTCGAAGCGTTCGAGGTAGC 14856 Query 60655 GCTTGCCATCGTTAGTCTTCAAGGCGTAGGAGTTATAGAACTTCAGCGCTCCCATGTAGG 60714 ||||||| ||| ||||| | | |||| | ||| |||| | ||| || | | | | Sbjct 14855 GCTTGCCGTCGAACGTCTTGAGCGTGTAGCTCGTGTAGTACTTGAACGCGCCGAGGAACG 14796 Query 60715 TCTTGAAGCGGAACTTGTGTCCGTAGGCCTGTTTCATGAGTCTCTTTAGGTCCTCGAAGC 60774 ||| ||| |||||||| | ||| ||| | | |||| ||| || |||| Sbjct 14795 TCTGGAACCGGAACTTCTTCGAGTACGCCAGGTCGTTGAG---CTTCTGG---ATGAAGT 14742 Query 60775 CGTAGCGAAGGAC--GAC-ATCCTTGTCCCATAGTTGGACT--TCCTCTGTGAGGTGATC 60829 || |||| || || | | ||| | | | | || | ||| | ||| |||| || Sbjct 14741 CG-AGCG-AGTACATGTCGATCGTCGCGCGCTCGTAGTACTCGTTCTCGACCAGGTAGTC 14684 Query 60830 CACCTTCTCCTCTAGGGAGTGAAAGAATACGGTGTTCTTGTTGACGTGCTCCAGGAAG 60887 | | ||||| ||| ||| ||||| |||||||||| ||||||||||| ||||||| Sbjct 14683 GAGCCGCTCCTTCAGGTTGTGGAAGAAGACGGTGTTCTGGTTGACGTGCTGCAGGAAG 14626 Score = 150 bits (166), Expect = 8e-32 Identities = 288/419 (69%), Gaps = 14/419 (3%) Strand=Plus/Minus Query 58400 GCAGCTTAGGCAACCTTCCACTTCCGTGCCTTCTACCG--ACTTAGCAGAGGTTCGGATG 58457 |||||| | ||| || || || || ||||| || | || | | || ||| |||||| Sbjct 16630 GCAGCTAACGCAGCCCTCGACCTCGGTGCCCTCGAGCGCGAGCTGGCGGAGA--CGGATG 16573 Query 58458 TAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATGTCTCGC 58517 ||||| | | ||| | |||||| |||||||||||||| ||| ||||| ||| Sbjct 16572 TAGTAGATCGTCTTGATGCCCTTGCGCCATGCGTAGATCTGCGCCTTGTTGATGTCACGC 16513 Query 58518 GTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAAGGAGAT 58577 || || || || || |||||||||||| || |||| ||||||||| || | | Sbjct 16512 GTGGTGGCGGTGTCCTTGAAGAACAGCGTCAGCGACAGGCCCTGGTCCACGTGCTGCGTC 16453 Query 58578 GCTACAGCGTACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCG--CTATCAATTG 58635 || | |||||| | || |||||| | | ||||| |||| ||| || | | | Sbjct 16452 GCCGCGGCGTACGTGTCGATGATCTTCTCGGCACCGATCTCGTACGCGTCCTGGTAGTAG 16393 Query 58636 ATTCTACATTCTCATTGGTCACTCCGTACTGAG---GGTAATAGACTCGACCAAGCTTAC 58692 || | || || || |||| | || | | |||| ||||| ||||| ||||| | Sbjct 16392 --TCCAGGTTGTCGTTCGTCAT---GAACGGCGCCGGGTAGTAGACGCGACCGAGCTTGC 16338 Query 58693 CCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATGGTTAA 58752 | |||||||| | ||| | || | | ||||| ||||| | ||||| ||||| | Sbjct 16337 CTTCCTTGCGGATCTCGATCTTCGACGCGATCGGGTGGATCGACGACGTGGAGTGGTTGA 16278 Query 58753 TGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATACCATGC 58811 |||||||||| || ||||| || |||| ||||| |||||||||||||| || || ||| Sbjct 16277 TGTACGAGATCGAACCGGTCGGCGGGACGGCCTGCAGGTTCTGGTTGTAGATGCCGTGC 16219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225552856516160