Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_009816.1
Length=70579
Score E
Sequences producing significant alignments: (Bits) Value
seq63522 268 4e-67
>seq63522
Length=32345
Score = 268 bits (296), Expect = 4e-67
Identities = 574/838 (68%), Gaps = 26/838 (3%)
Strand=Plus/Minus
Query 60063 CCGTACACCTTATTGATGTCATAAGGAGAGAATAGGGCCATAGGCTCGCTCTCCTTGGCA 60122
||||| ||||| | || ||| || || ||||| ||| ||| |||| | | ||| ||
Sbjct 15450 CCGTAGACCTTCTCGACGTCGTACGGCGAGAACAGGTACATGTCCTCGTTGTTCTTCGCG 15391
Query 60123 AGGCGGAACGTGACATCAGGAACGATAACTCCTAGGGAGAGAGTCTTAATACGGATCTTC 60182
|| |||||||| || ||||||| || || |||||||| ||||| || |||||||||
Sbjct 15390 AGCTCGAACGTGATGTCCGGAACGACGACACCGAGGGAGAGCGTCTTGATGCGGATCTTC 15331
Query 60183 TCGTCGGCGTTTTCACGCTTGGTATCCAGGAACGCAAGGATGTCGGGGTGGTGTGCGTTC 60242
||||| ||||| || |||||||| || |||||| | |||||| |||||||| ||| |
Sbjct 15330 TCGTCCGCGTTCTCGCGCTTGGTGTCGAGGAACTTCATGATGTCCGGGTGGTGGGCGCTG 15271
Query 60243 AAATATACCGCCCCTGCGCCCTGCCTTGCACCCAGTTGGTTAGAGTAGGAGAAGCTATCT 60302
| || ||||| || || ||||| | ||||| || ||||| | |||||||||| |||
Sbjct 15270 AGGTAGACCGCACCGGCACCCTGACGCGCACCGAGCTGGTTCGCGTAGGAGAAGGAGTCT 15211
Query 60303 TCTAGAATCTTCATCACAGGGATGACTCCAGAGGCCTGACCTTCTCGACC--CTTAATCG 60360
|| || | ||||||||| ||||||| || |||| ||| ||||||| | ||| ||||
Sbjct 15210 TCCAGCAGCTTCATCACGGGGATGATGCCCGAGGACTG--GTTCTCGATCTGCTTGATCG 15153
Query 60361 GAGCTCCTGCCTCGCGGAGGTTGGAGAATCCAATGCCGACTCCGCCACCACGCTTAGACA 60420
|||| || ||||| |||| |||||||| | | | || ||||| || ||||| || |
Sbjct 15152 GAGCGCCGGCCTCACGGATGTTGGAGAGGAGCAGGGCCACGCCGCCGCCGCGCTTCGAGA 15093
Query 60421 GCTGGAGAGAGTCCTGAACGATTCGACCGATGGACCCCATGGTGTCCTGAACATCGAGGA 60480
|||| || ||| | | | || ||| ||| ||||| |||||| | |||||
Sbjct 15092 GCTGCAGCGAGGAGTTGATGCCGCGCGAGATCGACTCCATGTTGTCCTCGATGCGGAGGA 15033
Query 60481 TGAAGCATGATACTGGCTTGCCTGCG-TCGAGAAGCCCCGCGTTGAGGAAGGTCGGAGTT 60539
|||||| || || | | ||| ||| | | | | | ||||||||| || || ||
Sbjct 15032 GGAAGCAGGAGACGAGTTCGCC-GCGCTGGGCCTTCGCGGTGTTGAGGAACGTGGGGGTC 14974
Query 60540 GCAGGCTGGAAGATTCCCTTGATAATGAGATCCACAAGG--GA-CTC-AGCGTGCTCGAA 60595
|| ||||||||| || ||| || || || ||| || | | ||| ||||||
Sbjct 14973 GCGGGCTGGAAGCGGCCGGCGATGATCTCCTCGACGAGGTCGATCGCGAGC-TGCTCGTT 14915
Query 60596 G-TCTTCGCTGTAGTGGATGGCCGTGAGTACCACTCGATCTTCGTAGCGCTCGTAATAGC 60654
| || ||| | || ||| || | || || || || ||| |||| ||| ||||
Sbjct 14914 GCCCTGCGC-CAGGCCGAGGGCGGTCATCACGACGCGGTCCTCGAAGCGTTCGAGGTAGC 14856
Query 60655 GCTTGCCATCGTTAGTCTTCAAGGCGTAGGAGTTATAGAACTTCAGCGCTCCCATGTAGG 60714
||||||| ||| ||||| | | |||| | ||| |||| | ||| || | | | |
Sbjct 14855 GCTTGCCGTCGAACGTCTTGAGCGTGTAGCTCGTGTAGTACTTGAACGCGCCGAGGAACG 14796
Query 60715 TCTTGAAGCGGAACTTGTGTCCGTAGGCCTGTTTCATGAGTCTCTTTAGGTCCTCGAAGC 60774
||| ||| |||||||| | ||| ||| | | |||| ||| || ||||
Sbjct 14795 TCTGGAACCGGAACTTCTTCGAGTACGCCAGGTCGTTGAG---CTTCTGG---ATGAAGT 14742
Query 60775 CGTAGCGAAGGAC--GAC-ATCCTTGTCCCATAGTTGGACT--TCCTCTGTGAGGTGATC 60829
|| |||| || || | | ||| | | | | || | ||| | ||| |||| ||
Sbjct 14741 CG-AGCG-AGTACATGTCGATCGTCGCGCGCTCGTAGTACTCGTTCTCGACCAGGTAGTC 14684
Query 60830 CACCTTCTCCTCTAGGGAGTGAAAGAATACGGTGTTCTTGTTGACGTGCTCCAGGAAG 60887
| | ||||| ||| ||| ||||| |||||||||| ||||||||||| |||||||
Sbjct 14683 GAGCCGCTCCTTCAGGTTGTGGAAGAAGACGGTGTTCTGGTTGACGTGCTGCAGGAAG 14626
Score = 150 bits (166), Expect = 8e-32
Identities = 288/419 (69%), Gaps = 14/419 (3%)
Strand=Plus/Minus
Query 58400 GCAGCTTAGGCAACCTTCCACTTCCGTGCCTTCTACCG--ACTTAGCAGAGGTTCGGATG 58457
|||||| | ||| || || || || ||||| || | || | | || ||| ||||||
Sbjct 16630 GCAGCTAACGCAGCCCTCGACCTCGGTGCCCTCGAGCGCGAGCTGGCGGAGA--CGGATG 16573
Query 58458 TAGTACAGAGACTTCAGGCCCTTCTTGTGAGCGTAGATCTGCGCTCGGTTAATGTCTCGC 58517
||||| | | ||| | |||||| |||||||||||||| ||| ||||| |||
Sbjct 16572 TAGTAGATCGTCTTGATGCCCTTGCGCCATGCGTAGATCTGCGCCTTGTTGATGTCACGC 16513
Query 58518 GTTGTCGCTGTATCTGGGAAGAACAGCGTGAGAGACATGCCCTGGTCTACCCAAGGAGAT 58577
|| || || || || |||||||||||| || |||| ||||||||| || | |
Sbjct 16512 GTGGTGGCGGTGTCCTTGAAGAACAGCGTCAGCGACAGGCCCTGGTCCACGTGCTGCGTC 16453
Query 58578 GCTACAGCGTACATATCAATGATCGGGTTAGGTCCGATAGCGTAAGCG--CTATCAATTG 58635
|| | |||||| | || |||||| | | ||||| |||| ||| || | | |
Sbjct 16452 GCCGCGGCGTACGTGTCGATGATCTTCTCGGCACCGATCTCGTACGCGTCCTGGTAGTAG 16393
Query 58636 ATTCTACATTCTCATTGGTCACTCCGTACTGAG---GGTAATAGACTCGACCAAGCTTAC 58692
|| | || || || |||| | || | | |||| ||||| ||||| ||||| |
Sbjct 16392 --TCCAGGTTGTCGTTCGTCAT---GAACGGCGCCGGGTAGTAGACGCGACCGAGCTTGC 16338
Query 58693 CCTCCTTGCGAACCTCAACAGGAGAGGTCACAGGGTGAATCGAGGCCGTGGCATGGTTAA 58752
| |||||||| | ||| | || | | ||||| ||||| | ||||| ||||| |
Sbjct 16337 CTTCCTTGCGGATCTCGATCTTCGACGCGATCGGGTGGATCGACGACGTGGAGTGGTTGA 16278
Query 58753 TGTACGAGATAGAGCCGGTTGGTGGGATCGCCTGGAGGTTCTGGTTGTAAATACCATGC 58811
|||||||||| || ||||| || |||| ||||| |||||||||||||| || || |||
Sbjct 16277 TGTACGAGATCGAACCGGTCGGCGGGACGGCCTGCAGGTTCTGGTTGTAGATGCCGTGC 16219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 225552856516160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |