Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq63495 116 4e-21 seq30144 91.5 2e-13 seq63299 82.4 9e-11 >seq63495 Length=23585 Score = 116 bits (128), Expect = 4e-21 Identities = 355/538 (66%), Gaps = 32/538 (6%) Strand=Plus/Plus Query 10630 CTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGC 10689 ||| ||||||| |||||||| ||||||||| | |||||||| ||| | |||| ||| Sbjct 13574 CTCGTTGAGGACGTTCGCCAGGTCGGCACCGGTGAAGCCCGGCGTCT----TGCG--GGC 13627 Query 10690 GTGTAGCTTCACATCGTCA------GCCAACTTCTTGTCTCTGGCGTGGACACCCAAAAT 10743 | | |||| | ||| | || | | |||| | ||||||| || | | || Sbjct 13628 GAGGAGCTCGAGGTCGACGCTCGCGGCGAGCGGCTTGCCCTTGGCGTGCACCTCGAGGAT 13687 Query 10744 CTTCTCGCGACCG-CGC-ACACTGGGTAGGGACACGGTGATCTTACGATCAAAGCGACCT 10801 || || ||||||| || || | ||| ||||| | |||| || || ||||| || Sbjct 13688 CTGCTTGCGACCGGCGAGACCCGGGGCGTCGACACCG--ATCTGGCGGTCGAAGCGGCCG 13745 Query 10802 GGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATG 10861 ||||||||||| || ||| || | || ||||||||||| ||||||| | || | Sbjct 13746 GGGCGGAGGAGCGCCGGGTCGAGCACGTCCGGACGGTTCGTCGCGGCGATGAGGATGACG 13805 Query 10862 CCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGT 10921 ||||| | || ||||| |||||||| | ||| || || | || || ||||| Sbjct 13806 TTCGTCTTGCCGTCGAAGCCGTCCATCTCGACGAGGAGCTGGTTCAGCGTCTGCTCGCGC 13865 Query 10922 TCATCATT--CGCGGGC-ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCA 10978 || || || ||| | | || || || | || || ||| |||||||| || || Sbjct 13866 TCGTCGTTGCCGCCGCCGAT---GCCGGCGCCACGGTGACGACCCACGGCGTCGATCTCG 13922 Query 10979 TCGATGAAAACGATACACG----GTTGATTTTCACGGGCAACTTCAAAGATATCTCGGAC 11034 |||||||| ||||| || ||| ||| | || || || | || ||||| Sbjct 13923 TCGATGAAGACGATGGCCGGGGAGTTCTGCTTCGCCTGC----TCGAACAGGTCACGGAC 13978 Query 11035 TCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGA 11093 | | || |||||||| || ||||| || || || | | ||| | || | | || Sbjct 13979 GCGGCTCGCGCCGACACCGACGAACATCTCGACGAAGTCCGAACCGG-AGATCGAGTAGA 14037 Query 11094 AGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | || || | ||||||||||| ||| || |||||||| ||||| || || || || Sbjct 14038 ACGGCACACCCGCTTCACCCGCGACGGCGCGAGCGAGGAGCGTCTTGCCGGTTCCGGG 14095 >seq30144 Length=14732 Score = 91.5 bits (100), Expect = 2e-13 Identities = 193/286 (67%), Gaps = 14/286 (5%) Strand=Plus/Plus Query 8648 GAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACGAGTC 8707 ||||||||| ||| | || || | || |||||| || |||||||||||||||||||| Sbjct 1966 GAATTACCGCGAAGCGTACGGGATATTCGCGTGCAATGGGATTCTCTTCAACCACGAGTC 2025 Query 8708 ACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC------GATGGTATCAAACA 8761 || ||||| || | |||||||||| | |||||| ||| | || | | | | Sbjct 2026 TCCTCGTCGGGGTGAGAATTTCGTGACGAGGAAGATAACCCGGGCTGTAGGGAGGATAAA 2085 Query 8762 AATCGTCGCGGGT-GAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACT 8820 ||||| || | |||| || | || |||||||| | | || ||||||| Sbjct 2086 AATCG----GGTTACAGAGCAAGGTGTTT---TTGGGGAATTTACAGGCGTCAAGGGACT 2138 Query 8821 GGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGG 8880 |||| || |||||||| ||||| |||||| | | || || ||||| | | | Sbjct 2139 GGGGCTTTGCTGGAGACTATGTAGAAGCAATGTGGATGATGCTGCAGCAAGAGAAACCAG 2198 Query 8881 ACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTT 8926 |||| || || || || |||| ||| ||||| | || |||||| Sbjct 2199 ACGACTACGTTGTGGCAACGGAGGATTCACACACTGTAGAGGAGTT 2244 >seq63299 Length=13169 Score = 82.4 bits (90), Expect = 9e-11 Identities = 244/368 (66%), Gaps = 10/368 (3%) Strand=Plus/Minus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || ||||| | || | || |||||| ||||| || || || ||||| Sbjct 6939 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 6880 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 | || | || || || | || || |||||||| |||||||| ||||| || | Sbjct 6879 AACAACTATTATACCAGTATTTCCTTCGAAACCATCCATTTCAGTCAATAGTTGGTTCAG 6820 Query 10909 GGTTTGTTCGCGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 10965 ||| ||||| | ||||||||| | | || | ||| | | || |||| || || Sbjct 6819 GGTCTGTTCCCTTTCATCATTTCCTCCTCCAATTCCAGTCCCTCT---TTGCCGCCCAAC 6763 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTT-CACGGGCAACTTCAAAGA 11024 || ||||||||||| | || || || || || ||||| | || | ||| ||| | Sbjct 6762 AGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-A 6704 Query 11025 TATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAAC 11084 ||| ||||||| ||| || ||||| |||||||| || || || | | | | ||| Sbjct 6703 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAGCCTGAA- 6645 Query 11085 ATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCC 11143 |||| || || || || | |||||| || || || || || | ||| ||||| Sbjct 6644 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCA 6585 Query 11144 GTCCCAGG 11151 || ||||| Sbjct 6584 GTACCAGG 6577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596878226005120