Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq63531 363 8e-96 seq63545 132 2e-26 >seq63531 Length=42858 Score = 363 bits (402), Expect = 8e-96 Identities = 556/789 (70%), Gaps = 9/789 (1%) Strand=Plus/Minus Query 65919 ACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTA 65978 ||||| ||| | || || |||| ||| ||||||||||| || || | ||||| | Sbjct 22950 ACCGGGTCGGTGGCGCTCGACGTCGCGCTCGGCATCGGTGGCCTGCCCCGTGGCCGCATC 22891 Query 65979 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 66038 || ||||||||||| || ||||| || || ||| | ||| || ||||||| | ||| Sbjct 22890 GTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACGATCCACGCCATCGCC 22831 Query 66039 AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCT 66098 || |||||| ||||| |||| ||| || | ||||||||| || || | |||||||| Sbjct 22830 AACGCCCAGCGCGCCGGCGGCATCGCGGCGTTCATCGACGCGGAGCACGCCCTCGACCCC 22771 Query 66099 GAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACT 66158 ||||||||| | |||||| || || ||||| || | || |||||| ||||| Sbjct 22770 GAGTACGCCAAGAAGCTCGGTGTCGACATCGACGCGCTGCTCGTGTCGCAGCCCGACACA 22711 Query 66159 GGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATC 66218 | |||||||| || ||||||| ||| | |||||| || ||| | | | ||||| Sbjct 22710 GCGGAGCAGGCGCTCGAGATCGCGGACATGCTCGTCCGCTCCGGCTCGATCGACCTCATC 22651 Query 66219 GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGAC 66278 || | ||||| || ||||| || ||||| || || ||| |||| || || || || ||| Sbjct 22650 GTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGCGAC 22591 Query 66279 TCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACG 66338 || |||||||| ||||| || ||||| ||||| |||||| | |||||||| |||| | Sbjct 22590 TCCCACGTCGGTCTGCAGGCGCGCCTCATGTCCCAGGCCCTCCGCAAGCTCGCCGGTGGG 22531 Query 66339 AT-TGCCAGCACC--AACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGC 66395 | |||| || | |||| | | | | | || |||||||||||||||||||| Sbjct 22530 CTGAACCAGACCCAGACCACGATGA---TCTTCATCAACCAGCTGCGCGAGAAGATCGG- 22475 Query 66396 AACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCC 66455 |||| || ||| | |||||||| |||| |||||||| ||| |||||||| Sbjct 22474 --CGTGTTCTTCGGTTCCCCCGAGACCACGTCCGGCGGTAAGGCGCTGAAGTTCTACGCG 22417 Query 66456 TCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGC 66515 || || || | || |||| | |||| || ||| || || || |||||| Sbjct 22416 TCCGTCCGACTCGACATCCGGCGCATCGAGACGCTCAAGAGCGGGACCGACGCCGTCGGC 22357 Query 66516 AACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAG 66575 |||||||| ||||| ||||| |||||||||||| ||||||| || | ||||| ||| Sbjct 22356 AACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGCAGGCCGAG 22297 Query 66576 TTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTT 66635 || |||| | ||||||| |||||| || || |||| ||||||||| | | || Sbjct 22296 TTCGACATCCTGTACGGCGTGGGCATCTCGCGAGAGGGCTCGCTCCTCGACTTCGGTGTC 22237 Query 66636 TCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGC 66695 || || || |||||||||| || ||||||| || |||| | | | | |||| Sbjct 22236 GACCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCTACGACGGCGACCAGCTCGGG 22177 Query 66696 CAGGGCAAG 66704 ||||||||| Sbjct 22176 CAGGGCAAG 22168 >seq63545 Length=90175 Score = 132 bits (146), Expect = 2e-26 Identities = 215/306 (70%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 59303 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCC 59362 || |||| ||| ||||| ||||| |||||||| | ||| || |||| ||||| || Sbjct 74069 GTGGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCG 74010 Query 59363 AACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGAC 59419 ||||||||| ||| ||||| | ||| |||| |||| ||| ||| ||| Sbjct 74009 AACTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGAC 73950 Query 59420 GGCGACGCCACATTCCTCCGCTGC-ACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 59478 |||||||| |||||||| ||| | | | |||||||| ||||||| |||| |||| Sbjct 73949 GGCGACGCGCTGTTCCTCCG-TGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGCGGG 73891 Query 59479 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 59538 || ||| ||| |||||||||| ||| || |||| |||||||||| | | Sbjct 73890 CTCACTGACGAAGGGCTCCCGCGTCATCGCGCAGGGTCGCCTCCGTCAGCGCTCCTACCA 73831 Query 59539 GACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 59598 | | || ||| | ||||||| ||||||| | ||||| |||||||||||||| || Sbjct 73830 GGACCGTGAGGGCCAGCAGCGCACGAGCATCGAGCTCGAGGTCGACGAGATCGGCCCCTC 73771 Query 59599 GCTGCG 59604 ||| || Sbjct 73770 GCTCCG 73765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242282266004288