Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_011056.1
Length=75811
Score E
Sequences producing significant alignments: (Bits) Value
seq63531 363 8e-96
seq63545 132 2e-26
>seq63531
Length=42858
Score = 363 bits (402), Expect = 8e-96
Identities = 556/789 (70%), Gaps = 9/789 (1%)
Strand=Plus/Minus
Query 65919 ACCGGCTCGATAGCTCTGGACGCCGCTCTCGGCATCGGGGGGTATCCGAGGGGCCGGGTA 65978
||||| ||| | || || |||| ||| ||||||||||| || || | ||||| |
Sbjct 22950 ACCGGGTCGGTGGCGCTCGACGTCGCGCTCGGCATCGGTGGCCTGCCCCGTGGCCGCATC 22891
Query 65979 GTGGAGATCTACGGTCCTGAGTCTTCAGGGAAGTCAACGTTGTGCCTCCACGCGGTGGCC 66038
|| ||||||||||| || ||||| || || ||| | ||| || ||||||| | |||
Sbjct 22890 GTCGAGATCTACGGCCCGGAGTCGTCGGGTAAGACCACGCTGACGATCCACGCCATCGCC 22831
Query 66039 AATGCCCAGAAGGCCGGTGGCAACGCCGCCTACATCGACGCCGAACATTCTCTCGACCCT 66098
|| |||||| ||||| |||| ||| || | ||||||||| || || | ||||||||
Sbjct 22830 AACGCCCAGCGCGCCGGCGGCATCGCGGCGTTCATCGACGCGGAGCACGCCCTCGACCCC 22771
Query 66099 GAGTACGCCGCGGCGCTCGGGGTGGATGTCGACAATCTCGTGGTTGTGCAGCCAGACACT 66158
||||||||| | |||||| || || ||||| || | || |||||| |||||
Sbjct 22770 GAGTACGCCAAGAAGCTCGGTGTCGACATCGACGCGCTGCTCGTGTCGCAGCCCGACACA 22711
Query 66159 GGCGAGCAGGCCCTGGAGATCGTTGACCTTCTCGTCAAGTCTGGCGAGGTTTCCATCATC 66218
| |||||||| || ||||||| ||| | |||||| || ||| | | | |||||
Sbjct 22710 GCGGAGCAGGCGCTCGAGATCGCGGACATGCTCGTCCGCTCCGGCTCGATCGACCTCATC 22651
Query 66219 GTTGTGGACTCTGTGGCGGCCCTGGTGCCGCGGGCGGAGCTCGAAGGGGACATCGGGGAC 66278
|| | ||||| || ||||| || ||||| || || ||| |||| || || || || |||
Sbjct 22650 GTCATCGACTCCGTCGCGGCGCTCGTGCCCCGCGCCGAGATCGAGGGCGAGATGGGCGAC 22591
Query 66279 TCGCACGTCGGCCTGCATGCCCGCCTGATGTCTCAGGCCATGCGCAAGCTGACCGGCACG 66338
|| |||||||| ||||| || ||||| ||||| |||||| | |||||||| |||| |
Sbjct 22590 TCCCACGTCGGTCTGCAGGCGCGCCTCATGTCCCAGGCCCTCCGCAAGCTCGCCGGTGGG 22531
Query 66339 AT-TGCCAGCACC--AACACGCTCACCCTGTGGGTGAATCAGCTGCGCGAGAAGATCGGC 66395
| |||| || | |||| | | | | | || ||||||||||||||||||||
Sbjct 22530 CTGAACCAGACCCAGACCACGATGA---TCTTCATCAACCAGCTGCGCGAGAAGATCGG- 22475
Query 66396 AACGTGGGCTACGGCCCGAATGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCC 66455
|||| || ||| | |||||||| |||| |||||||| ||| ||||||||
Sbjct 22474 --CGTGTTCTTCGGTTCCCCCGAGACCACGTCCGGCGGTAAGGCGCTGAAGTTCTACGCG 22417
Query 66456 TCGGTGCGTATGGATGTCCGCAGGATCGCCACCGAGAAGGAAGGCGATGAGGCTGTCGGC 66515
|| || || | || |||| | |||| || ||| || || || ||||||
Sbjct 22416 TCCGTCCGACTCGACATCCGGCGCATCGAGACGCTCAAGAGCGGGACCGACGCCGTCGGC 22357
Query 66516 AACCGCACGCGCGTGAAGGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAG 66575
|||||||| ||||| ||||| |||||||||||| ||||||| || | ||||| |||
Sbjct 22356 AACCGCACCCGCGTCAAGGTCGTCAAGAACAAGATGGCGCCGCCCTTCAAGCAGGCCGAG 22297
Query 66576 TTTTCCATCGTCTACGGCGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTT 66635
|| |||| | ||||||| |||||| || || |||| ||||||||| | | ||
Sbjct 22296 TTCGACATCCTGTACGGCGTGGGCATCTCGCGAGAGGGCTCGCTCCTCGACTTCGGTGTC 22237
Query 66636 TCCCGAGGGCTCATCAAGAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGC 66695
|| || || |||||||||| || ||||||| || |||| | | | | ||||
Sbjct 22236 GACCACGGCATCGTCAAGAAGTCGGGTGCCTGGTACACCTACGACGGCGACCAGCTCGGG 22177
Query 66696 CAGGGCAAG 66704
|||||||||
Sbjct 22176 CAGGGCAAG 22168
>seq63545
Length=90175
Score = 132 bits (146), Expect = 2e-26
Identities = 215/306 (70%), Gaps = 5/306 (2%)
Strand=Plus/Minus
Query 59303 GTCGGCACCCTGACCGCCGACCCCGAGCTGCGGTTCACCCAAGGTGGGCAGGCCGTCGCC 59362
|| |||| ||| ||||| ||||| |||||||| | ||| || |||| ||||| ||
Sbjct 74069 GTGGGCAACCTCACCGCGGACCCGGAGCTGCGCTACACGCAGAACGGGCTCGCCGTGGCG 74010
Query 59363 AACTTCACCGTCGTGTCCAACGAACGCCGCCGCGACGCCCAGGGCAAC---TGGGTCGAC 59419
||||||||| ||| ||||| | ||| |||| |||| ||| ||| |||
Sbjct 74009 AACTTCACCATCGCGTCCACCCCTCGCACGTTCGACCGTCAGGCGAACGAGTGGAAGGAC 73950
Query 59420 GGCGACGCCACATTCCTCCGCTGC-ACCATCTGGCGCGACGCCGCCGAGAACGTAGCGGA 59478
|||||||| |||||||| ||| | | | |||||||| ||||||| |||| ||||
Sbjct 73949 GGCGACGCGCTGTTCCTCCG-TGCGAGCGTGTGGCGCGAGTTCGCCGAGCACGTGGCGGG 73891
Query 59479 AAGCCTCCAGAAAGGCCAGCGCGTCATCGTGCATGGCTACCTCAAGCAGCGCTCCTTCGA 59538
|| ||| ||| |||||||||| ||| || |||| |||||||||| | |
Sbjct 73890 CTCACTGACGAAGGGCTCCCGCGTCATCGCGCAGGGTCGCCTCCGTCAGCGCTCCTACCA 73831
Query 59539 GACCAAGGAAGGCGACAAGCGCACCGTCATCGAGGTGGAGGTAGACGAGATCGGCCCGTC 59598
| | || ||| | ||||||| ||||||| | ||||| |||||||||||||| ||
Sbjct 73830 GGACCGTGAGGGCCAGCAGCGCACGAGCATCGAGCTCGAGGTCGACGAGATCGGCCCCTC 73771
Query 59599 GCTGCG 59604
||| ||
Sbjct 73770 GCTCCG 73765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 242282266004288
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |