Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_011271.1 Length=155372 Score E Sequences producing significant alignments: (Bits) Value seq61823 111 2e-19 seq63482 84.2 2e-11 >seq61823 Length=3776 Score = 111 bits (122), Expect = 2e-19 Identities = 114/147 (78%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 115022 CGGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTC 115081 ||||||||| ||||| |||| | || ||| |||| | |||| ||| |||||||| Sbjct 1488 CGGCCCGGGTCGTGGTTCCGGTGCCGGTTCGATGGTGGCGTACGCGATGCGCATCACCGA 1547 Query 115082 GATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTCATCAACCCGGACCGC--CCC 115139 ||||||||||| | ||| ||||| |||||||| ||| |||||||||||||| | | Sbjct 1548 CCTCGACCCGATCCGGCACGGGCTGATCTTCGAGCGGTTCCTCAACCCGGACCGCGTCTC 1607 Query 115140 GACTTCCCCGACATCGACGTCGACTTC 115166 || | |||||| |||||||||||||| Sbjct 1608 GA--TGCCCGACTTCGACGTCGACTTC 1632 >seq63482 Length=21584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 92211 ACACCACGGGGTGTAGTTCAGTTTGGAAGAGCGCTTGGTTTGGGACCAAGATGTCGCAGG 92270 ||||| |||||||| | ||| |||| || |||| | ||| ||||| | || |||||||| Sbjct 13408 ACACCGCGGGGTGTGGCGCAGCTTGGTAGCGCGCCTCGTTCGGGACGAGGAGGTCGCAGG 13349 Query 92271 TTCGAATCCTGTCACCCCGAC 92291 ||| ||||||||||||||||| Sbjct 13348 TTCAAATCCTGTCACCCCGAC 13328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496666837742080