Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_011273.1
Length=164602
Score E
Sequences producing significant alignments: (Bits) Value
seq63522 838 0.0
seq63493 401 7e-107
seq62752 233 2e-56
seq61823 84.2 2e-11
>seq63522
Length=32345
Score = 838 bits (928), Expect = 0.0
Identities = 752/942 (80%), Gaps = 4/942 (0%)
Strand=Plus/Plus
Query 155935 GCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACC 155994
|||||||||||||||||| | ||||| ||||||| ||||| |||||||| || |
Sbjct 16774 GCCATCAACTGGAACCGCATCCAGGACGACAAGGACGTCGAGGTCTGGAACCGCCTCGTC 16833
Query 155995 AACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCAG 156054
||||||||||||||||| |||||| | ||| |||| || ||||| ||||||||| || |
Sbjct 16834 AACAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCGAACGACGTGCAGTCGTGGAACACG 16893
Query 156055 CTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGAC 156114
||||| || |||| | | |||||||| ||||||||||||||||| ||||||||
Sbjct 16894 CTGACGCCGGCCGAGCAGAAGCTGACCATGCGCGTGTTCACCGGCCTGACCCTGCTGGAC 16953
Query 156115 ACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGAG 156174
||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||||||
Sbjct 16954 ACCATCCAGGGCACCGTCGGCGCCGTGTCGCTCATCCCCGACGCGATCACCCCGCACGAA 17013
Query 156175 GAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTACTCGAAC 156234
|| || || ||||| |||||||||||||||||| |||||||| ||||||||
Sbjct 17014 GAAGCCGTCTACACGAACATCGCGTTCATGGAGTCGGTGCACGCCAAGAGCTACTCCTCG 17073
Query 156235 ATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGGAG 156294
||||||||||| || || || ||||||||||| || ||||||||||| ||||||
Sbjct 17074 ATCTTCTCGACCCTCGCGTCGACGCCGGAGATCGACGAGGCATTCCGCTGGTCCGAGGAG 17133
Query 156295 AACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGACGACCCG 156354
||| | ||||||||||||||||| |||||| | ||||||| | || ||| |||||
Sbjct 17134 AACCCGAACCTGCAGAAGAAGGCGTCCATCGTGATGGACTACTACCAGGGCGACAACCCG 17193
Query 156355 CTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCTAC 156414
|| |||||||||||||| || |||||||| ||| |||||||||||| ||||||||||
Sbjct 17194 CTGAAGCGCAAGGTCGCGTCGACGCTGCTCGAGTCGTTCCTGTTCTACTCCGGCTTCTAC 17253
Query 156415 CTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATCCGGCTC 156474
||||||||| |||||| ||||| | ||||||||| |||||||| ||| | ||||| ||
Sbjct 17254 CTGCCGATGCACTGGTCCTCGCGTGCCAAGCTCACGAACACCGCGGACCTCATCCGCCTG 17313
Query 156475 ATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGCCTG 156534
|||||||| ||||| ||||| || || ||||||||||| ||||||||||||||||| ||
Sbjct 17314 ATCATCCGTGACGAAGCCGTCCATGGGTACTACATCGGGTACAAGTTCCAGAAGGGGCTC 17373
Query 156535 GAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCTGCTGTTC 156594
||| ||| ||| ||||| | | || || ||||| ||||||| ||| ||| |
Sbjct 17374 GAGCAGGCGACGCAGGCCGAGCGCGACGAGCTGAAGGATTACACCTTCTCGCTCATGTAC 17433
Query 156595 GAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGCCAGACC 156654
||||||| |||||||||| | ||||||| |||||||||||||||| ||| | |||
Sbjct 17434 GAGCTGTACGACAACGAGGTGCAGTACACGCAGGACCTCTACGACGAGGTCGGTCTCACC 17493
Query 156655 GAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTGGGCTAC 156714
||||| || ||||||||||||| ||||||| ||||||||| ||| |||||||||||||
Sbjct 17494 GAGGATGTCAAGAAGTTCCTGCACTACAACGCCAACAAGGCGCTGATGAACCTGGGCTAC 17553
Query 156715 GACGCGCTGTTCAGCCGCAG--CGACTGCGACGTCAACCCGGCCATCCTGAGCGCGCTGT 156772
|| || ||||| ||| || | | ||||| |||||||| |||||| ||| ||||
Sbjct 17554 GAGCCGATGTTC--CCGAAGAACATCACGGACGTGAACCCGGCGATCCTGTCCGCCCTGT 17611
Query 156773 CGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACGTCATGG 156832
|||| | ||||||||||||||||||||||||||||| ||| |||||||||| |
Sbjct 17612 CGCCGAACGCCGACGAGAACCACGACTTCTTCTCGGGGTCTGGCTCGTCGTACGTCATCG 17671
Query 156833 CCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGAT 156874
||||| ||| |||||| ||||| ||||||||||||||||
Sbjct 17672 GCAAGGCCGTGAACACCGAGGACGAGGACTGGGACTTCTGAT 17713
>seq63493
Length=23541
Score = 401 bits (444), Expect = 7e-107
Identities = 350/435 (80%), Gaps = 0/435 (0%)
Strand=Plus/Plus
Query 152885 CATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGC 152944
||| |||||||||||||||||||| |||||||| || ||||||||| ||||| |||||
Sbjct 185 CATGTTCGAGAGATTCACCGACCGAGCCCGTCGTGTTGTCGTCCTCGCTCAAGAAGAAGC 244
Query 152945 GCGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGA 153004
| ||||||||||| ||||||||||||||||| | || ||||| || |||||||
Sbjct 245 GAAGATGCTCAACCACAACTACATCGGCACCGAGCACATCCTCCTCGGCCTCATCCACGA 304
Query 153005 GGGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCG 153064
|||||||||||| ||||| ||||||||| || |||||| |||| || || | || ||
Sbjct 305 GGGCGAGGGCGTCGCCGCGAAGGCGCTGGAGTCGCTCGGCATCTCGCTCGATGCCGTCCG 364
Query 153065 TGCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTT 153124
| ||||| |||| |||||||| || ||||||||| || |||||||||||||||||
Sbjct 365 CGAGCAGGTCCAGGACATCATCGGGCAGGGCCAGCAGCAGCCGACCGGGCACATCCCGTT 424
Query 153125 CACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCA 153184
||| ||| ||||| || || |||||||| ||||||||||||||||||||||||||
Sbjct 425 CACGCCGCGCGCCAAGAAGGTGCTCGAGCTGTCCCTGCGCGAGGCGCTGCAGCTCGGCCA 484
Query 153185 CAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGG 153244
||||||||||||||| ||||| ||||||| | ||| ||||||||||| ||||| || |
Sbjct 485 CAACTACATCGGCACGGAGCACATCCTGCTCGGCCTCATCCGCGAGGGCGAGGGTGTCGC 544
Query 153245 CTGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCATCCA 153304
|||||| || || |||| |||||| || || | | |||||||||| |||||||||
Sbjct 545 AGCCCAGGTCCTCGTCAAGCTCGGCGCCGACCTCAACCGGGTCCGCCAGCAGGTCATCCA 604
Query 153305 GCTGCTGTCCGGGTA 153319
||| |||||||| ||
Sbjct 605 GCTCCTGTCCGGCTA 619
>seq62752
Length=6345
Score = 233 bits (258), Expect = 2e-56
Identities = 809/1240 (65%), Gaps = 98/1240 (8%)
Strand=Plus/Minus
Query 161217 CATCGGCGTCTCGCACATCGGCGCGCTGCACGAGCTGGGCTACCTGCCCGTGGAGTTCCG 161276
||||||| | ||| || |||| |||||| |||||||||||||| | ||| ||||
Sbjct 2876 CATCGGCACCGACCACGTCCGCGCCCTGCACCGCCTGGGCTACCTGCCGCTCGAGATCCG 2817
Query 161277 GGCCTTCCCCGAGGGCACGCTGGTGCCCATCCGCGTGCCGAGCTTCACCGTGGAGAACAC 161336
|| | ||||||||||| || | || ||| |||| | | | | || || ||||||||
Sbjct 2816 CGCGCTGCCCGAGGGCACCCTCGCTCCGATCGGCGTCGCCACCCTGACGGTCGAGAACAC 2757
Query 161337 TCACGATGAGTTCTTCTGGCTGACCAACTACCTGGAGACCGGCA---TCAGCGCCGCCGT 161393
||| ||||||||||||||| | |||||| | |||||| ||| || ||| || |
Sbjct 2756 CGTCGACGAGTTCTTCTGGCTGCCGAACTACATCGAGACC-GCACTGTCTGCGTCG--AT 2700
Query 161394 GTGGGGTCCGAGCACCTCGGCCACGATCGCGCACGCCTTCCGGGTCAAGCTGGAGGA--- 161450
||| || || ||||||| |||| || | ||| | | |||||||
Sbjct 2699 CTGGCACCCCTCGACGGTCGCCACGAAGGCGCTCGAGTACCGCGACCTCATGGAGGACTG 2640
Query 161451 GTTCGCCCGCAAGCAGGGCCTGGACCAGGGCTACATCGACTTC-CAGCTGCACGACTTCT 161509
| |||||||| | || | | || | | |||||||||| | || ||||||||||
Sbjct 2639 GGCCGCCCGCA--CCGGTGCAGATCCCGCG-AGCATCGACTTCGCCGC-CCACGACTTCT 2584
Query 161510 CGTTCCG-GGGCATGAACAGCTGGGAGAGCGCCGCCAGCTCG-GGTGCCGCCCACCTGCT 161567
||||||| ||||| | ||| ||| |||| | || | ||||||| ||||||||
Sbjct 2583 CGTTCCGCGGGCA-GTCGAGCATCGAGTCGGCCG-CGGCGGGCGGTGCCGGACACCTGCT 2526
Query 161568 GAGCTTCCTGGGTAGCGACAGCCTGAGCGCCTGGGACTTCATCGAGGCCTACTACGGCGG 161627
||||| || | |||| || | || ||||||||||| ||||||| |||
Sbjct 2525 CTCGTTCCTCGGCACCGACTCGATGCCCTCCCTCGACTTCATCGACCGCTACTACCCCGG 2466
Query 161628 CGACTTC-------TCGCTGCTGAGCGTGGCCGCGACCGAGCACAGCGTCATGAGCACCG 161680
|||| | | || || |||||| ||||||||||||||||||||||| || |
Sbjct 2465 CGACAACGGCTGGGTGGCGGC-GAGCGTCCCCGCGACCGAGCACAGCGTCATGTGCGTCC 2407
Query 161681 GCATCATGAGCCAGGGACCGGCGGAGCGCGAGAGCAACGAGGCGTTCCTGTTCGCCAAGC 161740
|| | ||| || |||| |||| |||| | ||||| ||
Sbjct 2406 GC----GGCGCC---GA-CGGC-GAGCTGGAGACC---------------TTCGCGCAGA 2371
Query 161741 TGCTGGACCTCTACCCCACCGGCATC--CTCAGCGTCGTGAGCGACACCTTCGACCTGTG 161798
| || ||| | ||||| || |||||| ||| ||| ||||||||| |||||||||||
Sbjct 2370 TCCTCGACGTGTACCCGACGGGCATCGTCTCGGCG--GTGAGCGACGGCTTCGACCTGTT 2313
Query 161799 GAACGTGCT---GGAGAGCATCCTGCCCGGTCTGCGCGACAAGGTGATGGCTCGCGAGGG 161855
|| || || |||| ||| || || ||| | | || ||||| ||
Sbjct 2312 CAAGGTCCTCACCGAGACGCTCCCGC---AGCTCAAGGACCGCATCACCGCCCGCGACGG 2256
Query 161856 CAAGCTGGTCATCCGGCCCGACTCGGGTGACCCGGAGAAGATC----------CTGTG-- 161903
|||||| |||||||| || |||||||| ||||||| | ||| | |||
Sbjct 2255 CAAGCTCGTCATCCGTCCGGACTCGGGCGACCCGGTCGACATCGTCACCGGCACCGTGCA 2196
Query 161904 CGGCAACCCGGCGG----------GTCGCTCGGTGGC-----CGAGCAGCGCGGCGTCAT 161948
|||| ||| | || ||| |||| || |||| || |||||| |
Sbjct 2195 CGGCGTCCCCGAGGCCGAGCTCACCGCGCCCGGTCGCAGCCACGAGGAGAAGGGCGTCGT 2136
Query 161949 CAGCCTGCTGTGGGAGACCTTCGGCGGCACCACCAACGCCGAGGGCTACCGCGAGCTGGA 162008
| || || ||| ||||||| ||| ||||| | |||||| | | ||| ||
Sbjct 2135 CGAACTCCTCGACGAGCTCTTCGGCCACACGGTCAACGACCAGGGCTTCAAGGTGCTCGA 2076
Query 162009 CCCGCACATCGGTGCCATCTACGGCGACAGCATCACGCTCGATCGCGCACAGGCGATCCT 162068
|| ||||||||| | ||||||||||||||||||||| ||||| || || | ||||
Sbjct 2075 CCAGCACATCGGCGTCATCTACGGCGACAGCATCACCCTCGACCGTGCCCGCCGGATCTA 2016
Query 162069 GGCCAACCT-GCAGCGTCAGGGCTTCGCTGCCAGTAACGTCGTGTTCGGCGTGGGCAGCT 162127
| ||| || ||| |||||| | | | ||| ||||| ||||| | || |
Sbjct 2015 CGAGCGCCTCGCCGCG-AAGGGCTACTCGAGCGACAACATCGTGCTCGGCATCGGGTCGT 1957
Query 162128 ACACGTACCAGTACAACACCCGCGACACGTTCGGTTCAGCAATGAAGGCGACGTGGGCGC 162187
||||||||||||||| || || |||| |||| || ||||||| || ||||| |
Sbjct 1956 ACACGTACCAGTACATGACGCGGGACAACCTCGGCAGCGCCGTGAAGGCCACCTGGGCAC 1897
Query 162188 AGGTCAACGGCAAGGGCGTGAACCTGTTCAAGGACCCGATCACCGACGACGGGACCAAGA 162247
|||| ||||| || ||| || | |||||||||| |||| | ||| |||||
Sbjct 1896 TGGTCGACGGCGAGCCCGTCGACATCCAGAAGGACCCGAAGACCGGCAGCGG---CAAGA 1840
Query 162248 AGAGCGCCACGGGTCGCTTGGCCGTACTGGGCGGCGACG-GT--GAGGACTTCTACCTGG 162304
||||||||| ||| ||| | ||| ||| | |||||| || | || || | |
Sbjct 1839 AGAGCGCCAAGGGCCGCATCGCC---CTGCACCGCGACGAGTCGGGCGAGATCCGGCAGA 1783
Query 162305 TGGAGAAGGCCGACGCCGAGACCGAGCAGCGCAGCGCGCTGCAGCCCGTCTGGAGGAACG 162364
|| |||| |||||| |||| | |||| ||| ||||| || ||| |||
Sbjct 1782 CCGACCAGGCGACCGCCGACGACGAGGCGACCAGCCTGCTCCAGCCGGTGTGGGTCGACG 1723
Query 162365 GGCACTTCACCCAGCACCAGAGCTTCGCCGAGGTTCGCGA 162404
| | |||||| | | |||| |||||||| || |||||
Sbjct 1722 GACGCTTCACGCGCCTCCAGTCGTTCGCCGACGTCCGCGA 1683
>seq61823
Length=3776
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/114 (76%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 110993 CGGCCCTGGCCGTGGCTCCGGCGGCGGCTCGCTGGTGAACTACCTGCTGGGCATCACCTC 111052
|||||| || ||||| ||||| | ||| ||| ||||| ||| | || ||||||||
Sbjct 1488 CGGCCCGGGTCGTGGTTCCGGTGCCGGTTCGATGGTGGCGTACGCGATGCGCATCACCGA 1547
Query 111053 GCTCGACCCGATCAAGTACGACCTGTCGTTCGAGCGGTTCATCAACCCCGACCG 111106
|||||||||||| | ||| ||| |||||||||||| ||||||| |||||
Sbjct 1548 CCTCGACCCGATCCGGCACGGGCTGATCTTCGAGCGGTTCCTCAACCCGGACCG 1601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 526179332993280
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