Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_011273.1 Length=164602 Score E Sequences producing significant alignments: (Bits) Value seq63522 838 0.0 seq63493 401 7e-107 seq62752 233 2e-56 seq61823 84.2 2e-11 >seq63522 Length=32345 Score = 838 bits (928), Expect = 0.0 Identities = 752/942 (80%), Gaps = 4/942 (0%) Strand=Plus/Plus Query 155935 GCCATCAACTGGAACCGCGTGATCGACGAGAAGGACGCGGAGGTGTGGAACCGGCTGACC 155994 |||||||||||||||||| | ||||| ||||||| ||||| |||||||| || | Sbjct 16774 GCCATCAACTGGAACCGCATCCAGGACGACAAGGACGTCGAGGTCTGGAACCGCCTCGTC 16833 Query 155995 AACAACTTCTGGCTGCCGGAGAAGATCCCGGTGTCCAATGACGTCCAGTCGTGGCACCAG 156054 ||||||||||||||||| |||||| | ||| |||| || ||||| ||||||||| || | Sbjct 16834 AACAACTTCTGGCTGCCCGAGAAGGTGCCGCTGTCGAACGACGTGCAGTCGTGGAACACG 16893 Query 156055 CTGACCGAGGAAGAGCGCCTGATCACCATGCGGGTGTTCACCGGCCTGACGATGCTGGAC 156114 ||||| || |||| | | |||||||| ||||||||||||||||| |||||||| Sbjct 16894 CTGACGCCGGCCGAGCAGAAGCTGACCATGCGCGTGTTCACCGGCCTGACCCTGCTGGAC 16953 Query 156115 ACCATCCAGGGCACCGTCGGCGCGGTCTCGCTCATCCCGGACGCCATCACCCCGCACGAG 156174 ||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||| Sbjct 16954 ACCATCCAGGGCACCGTCGGCGCCGTGTCGCTCATCCCCGACGCGATCACCCCGCACGAA 17013 Query 156175 GAGGCGGTGTACACCAACATCGCGTTCATGGAGAGCGTGCACGCACGCAGCTACTCGAAC 156234 || || || ||||| |||||||||||||||||| |||||||| |||||||| Sbjct 17014 GAAGCCGTCTACACGAACATCGCGTTCATGGAGTCGGTGCACGCCAAGAGCTACTCCTCG 17073 Query 156235 ATCTTCTCGACGCTGTGCTCCACCAAGGAGATCGACGCCGCGTTCCGCTGGTCGGAGGAG 156294 ||||||||||| || || || ||||||||||| || ||||||||||| |||||| Sbjct 17074 ATCTTCTCGACCCTCGCGTCGACGCCGGAGATCGACGAGGCATTCCGCTGGTCCGAGGAG 17133 Query 156295 AACGCCAACCTGCAGAAGAAGGCTGAGATCGTGCTCAGCTACTACAACGGTGACGACCCG 156354 ||| | ||||||||||||||||| |||||| | ||||||| | || ||| ||||| Sbjct 17134 AACCCGAACCTGCAGAAGAAGGCGTCCATCGTGATGGACTACTACCAGGGCGACAACCCG 17193 Query 156355 CTCAAGCGCAAGGTCGCCTCCACGCTGCTGGAGGGCTTCCTGTTCTACAGCGGCTTCTAC 156414 || |||||||||||||| || |||||||| ||| |||||||||||| |||||||||| Sbjct 17194 CTGAAGCGCAAGGTCGCGTCGACGCTGCTCGAGTCGTTCCTGTTCTACTCCGGCTTCTAC 17253 Query 156415 CTGCCGATGTTCTGGTCGTCGCGAGGCAAGCTCACCAACACCGCCGACATGATCCGGCTC 156474 ||||||||| |||||| ||||| | ||||||||| |||||||| ||| | ||||| || Sbjct 17254 CTGCCGATGCACTGGTCCTCGCGTGCCAAGCTCACGAACACCGCGGACCTCATCCGCCTG 17313 Query 156475 ATCATCCGGGACGAGGCCGTGCACGGCTACTACATCGGCTACAAGTTCCAGAAGGGCCTG 156534 |||||||| ||||| ||||| || || ||||||||||| ||||||||||||||||| || Sbjct 17314 ATCATCCGTGACGAAGCCGTCCATGGGTACTACATCGGGTACAAGTTCCAGAAGGGGCTC 17373 Query 156535 GAGAAGGAGACCAAGGCCCGCCAGCAGGAACTCAAGGACTACACCTATGAGCTGCTGTTC 156594 ||| ||| ||| ||||| | | || || ||||| ||||||| ||| ||| | Sbjct 17374 GAGCAGGCGACGCAGGCCGAGCGCGACGAGCTGAAGGATTACACCTTCTCGCTCATGTAC 17433 Query 156595 GAGCTGTTCGACAACGAGCAGGAGTACACCCAGGACCTCTACGACGCCACCGGCCAGACC 156654 ||||||| |||||||||| | ||||||| |||||||||||||||| ||| | ||| Sbjct 17434 GAGCTGTACGACAACGAGGTGCAGTACACGCAGGACCTCTACGACGAGGTCGGTCTCACC 17493 Query 156655 GAGGACGTGAAGAAGTTCCTGCGGTACAACGGCAACAAGGCCCTGCAGAACCTGGGCTAC 156714 ||||| || ||||||||||||| ||||||| ||||||||| ||| ||||||||||||| Sbjct 17494 GAGGATGTCAAGAAGTTCCTGCACTACAACGCCAACAAGGCGCTGATGAACCTGGGCTAC 17553 Query 156715 GACGCGCTGTTCAGCCGCAG--CGACTGCGACGTCAACCCGGCCATCCTGAGCGCGCTGT 156772 || || ||||| ||| || | | ||||| |||||||| |||||| ||| |||| Sbjct 17554 GAGCCGATGTTC--CCGAAGAACATCACGGACGTGAACCCGGCGATCCTGTCCGCCCTGT 17611 Query 156773 CGCCCGGTGGAGACGAGAACCACGACTTCTTCTCGGGGTCGGGCAGCACGTACGTCATGG 156832 |||| | ||||||||||||||||||||||||||||| ||| |||||||||| | Sbjct 17612 CGCCGAACGCCGACGAGAACCACGACTTCTTCTCGGGGTCTGGCTCGTCGTACGTCATCG 17671 Query 156833 CCAAGGGTGTGGTCACCGAAGACGACGACTGGGACTTCTGAT 156874 ||||| ||| |||||| ||||| |||||||||||||||| Sbjct 17672 GCAAGGCCGTGAACACCGAGGACGAGGACTGGGACTTCTGAT 17713 >seq63493 Length=23541 Score = 401 bits (444), Expect = 7e-107 Identities = 350/435 (80%), Gaps = 0/435 (0%) Strand=Plus/Plus Query 152885 CATCTTCGAGAGATTCACCGACCGCGCCCGTCGCGTCTGCGTCCTCGCCCAAGAGGAAGC 152944 ||| |||||||||||||||||||| |||||||| || ||||||||| ||||| ||||| Sbjct 185 CATGTTCGAGAGATTCACCGACCGAGCCCGTCGTGTTGTCGTCCTCGCTCAAGAAGAAGC 244 Query 152945 GCGCATGCTCAACCATGCGTACATCGGCACCGAGCATCTGCTGCTCGGGCTGGTCCACGA 153004 | ||||||||||| ||||||||||||||||| | || ||||| || ||||||| Sbjct 245 GAAGATGCTCAACCACAACTACATCGGCACCGAGCACATCCTCCTCGGCCTCATCCACGA 304 Query 153005 GGGCGAGGGCGTAGCCGCCAAGGCGCTGCAGGCGCTCGACATCAACCTGGAGGAGGTGCG 153064 |||||||||||| ||||| ||||||||| || |||||| |||| || || | || || Sbjct 305 GGGCGAGGGCGTCGCCGCGAAGGCGCTGGAGTCGCTCGGCATCTCGCTCGATGCCGTCCG 364 Query 153065 TGCCGAGGTCGAGGAGATCATCGGCCACGGCCAGCAGGCACCCACCGGGCACATCCCGTT 153124 | ||||| |||| |||||||| || ||||||||| || ||||||||||||||||| Sbjct 365 CGAGCAGGTCCAGGACATCATCGGGCAGGGCCAGCAGCAGCCGACCGGGCACATCCCGTT 424 Query 153125 CACCGACCGCTCCAAGCGCGTCCTGGAGCTGTCGCTGCGCGAGGCGCTGCAGCTCGGCCA 153184 ||| ||| ||||| || || |||||||| |||||||||||||||||||||||||| Sbjct 425 CACGCCGCGCGCCAAGAAGGTGCTCGAGCTGTCCCTGCGCGAGGCGCTGCAGCTCGGCCA 484 Query 153185 CAACTACATCGGCACCGAGCATCTCCTGCTGGCCCTGATCCGCGAGGGTGAGGGCGTGGG 153244 ||||||||||||||| ||||| ||||||| | ||| ||||||||||| ||||| || | Sbjct 485 CAACTACATCGGCACGGAGCACATCCTGCTCGGCCTCATCCGCGAGGGCGAGGGTGTCGC 544 Query 153245 CTGCCAGGTGCTGGTGAAGCGCGGCGCGGAGCTGACCAAGGTCCGCCAGGTGGTCATCCA 153304 |||||| || || |||| |||||| || || | | |||||||||| ||||||||| Sbjct 545 AGCCCAGGTCCTCGTCAAGCTCGGCGCCGACCTCAACCGGGTCCGCCAGCAGGTCATCCA 604 Query 153305 GCTGCTGTCCGGGTA 153319 ||| |||||||| || Sbjct 605 GCTCCTGTCCGGCTA 619 >seq62752 Length=6345 Score = 233 bits (258), Expect = 2e-56 Identities = 809/1240 (65%), Gaps = 98/1240 (8%) Strand=Plus/Minus Query 161217 CATCGGCGTCTCGCACATCGGCGCGCTGCACGAGCTGGGCTACCTGCCCGTGGAGTTCCG 161276 ||||||| | ||| || |||| |||||| |||||||||||||| | ||| |||| Sbjct 2876 CATCGGCACCGACCACGTCCGCGCCCTGCACCGCCTGGGCTACCTGCCGCTCGAGATCCG 2817 Query 161277 GGCCTTCCCCGAGGGCACGCTGGTGCCCATCCGCGTGCCGAGCTTCACCGTGGAGAACAC 161336 || | ||||||||||| || | || ||| |||| | | | | || || |||||||| Sbjct 2816 CGCGCTGCCCGAGGGCACCCTCGCTCCGATCGGCGTCGCCACCCTGACGGTCGAGAACAC 2757 Query 161337 TCACGATGAGTTCTTCTGGCTGACCAACTACCTGGAGACCGGCA---TCAGCGCCGCCGT 161393 ||| ||||||||||||||| | |||||| | |||||| ||| || ||| || | Sbjct 2756 CGTCGACGAGTTCTTCTGGCTGCCGAACTACATCGAGACC-GCACTGTCTGCGTCG--AT 2700 Query 161394 GTGGGGTCCGAGCACCTCGGCCACGATCGCGCACGCCTTCCGGGTCAAGCTGGAGGA--- 161450 ||| || || ||||||| |||| || | ||| | | ||||||| Sbjct 2699 CTGGCACCCCTCGACGGTCGCCACGAAGGCGCTCGAGTACCGCGACCTCATGGAGGACTG 2640 Query 161451 GTTCGCCCGCAAGCAGGGCCTGGACCAGGGCTACATCGACTTC-CAGCTGCACGACTTCT 161509 | |||||||| | || | | || | | |||||||||| | || |||||||||| Sbjct 2639 GGCCGCCCGCA--CCGGTGCAGATCCCGCG-AGCATCGACTTCGCCGC-CCACGACTTCT 2584 Query 161510 CGTTCCG-GGGCATGAACAGCTGGGAGAGCGCCGCCAGCTCG-GGTGCCGCCCACCTGCT 161567 ||||||| ||||| | ||| ||| |||| | || | ||||||| |||||||| Sbjct 2583 CGTTCCGCGGGCA-GTCGAGCATCGAGTCGGCCG-CGGCGGGCGGTGCCGGACACCTGCT 2526 Query 161568 GAGCTTCCTGGGTAGCGACAGCCTGAGCGCCTGGGACTTCATCGAGGCCTACTACGGCGG 161627 ||||| || | |||| || | || ||||||||||| ||||||| ||| Sbjct 2525 CTCGTTCCTCGGCACCGACTCGATGCCCTCCCTCGACTTCATCGACCGCTACTACCCCGG 2466 Query 161628 CGACTTC-------TCGCTGCTGAGCGTGGCCGCGACCGAGCACAGCGTCATGAGCACCG 161680 |||| | | || || |||||| ||||||||||||||||||||||| || | Sbjct 2465 CGACAACGGCTGGGTGGCGGC-GAGCGTCCCCGCGACCGAGCACAGCGTCATGTGCGTCC 2407 Query 161681 GCATCATGAGCCAGGGACCGGCGGAGCGCGAGAGCAACGAGGCGTTCCTGTTCGCCAAGC 161740 || | ||| || |||| |||| |||| | ||||| || Sbjct 2406 GC----GGCGCC---GA-CGGC-GAGCTGGAGACC---------------TTCGCGCAGA 2371 Query 161741 TGCTGGACCTCTACCCCACCGGCATC--CTCAGCGTCGTGAGCGACACCTTCGACCTGTG 161798 | || ||| | ||||| || |||||| ||| ||| ||||||||| ||||||||||| Sbjct 2370 TCCTCGACGTGTACCCGACGGGCATCGTCTCGGCG--GTGAGCGACGGCTTCGACCTGTT 2313 Query 161799 GAACGTGCT---GGAGAGCATCCTGCCCGGTCTGCGCGACAAGGTGATGGCTCGCGAGGG 161855 || || || |||| ||| || || ||| | | || ||||| || Sbjct 2312 CAAGGTCCTCACCGAGACGCTCCCGC---AGCTCAAGGACCGCATCACCGCCCGCGACGG 2256 Query 161856 CAAGCTGGTCATCCGGCCCGACTCGGGTGACCCGGAGAAGATC----------CTGTG-- 161903 |||||| |||||||| || |||||||| ||||||| | ||| | ||| Sbjct 2255 CAAGCTCGTCATCCGTCCGGACTCGGGCGACCCGGTCGACATCGTCACCGGCACCGTGCA 2196 Query 161904 CGGCAACCCGGCGG----------GTCGCTCGGTGGC-----CGAGCAGCGCGGCGTCAT 161948 |||| ||| | || ||| |||| || |||| || |||||| | Sbjct 2195 CGGCGTCCCCGAGGCCGAGCTCACCGCGCCCGGTCGCAGCCACGAGGAGAAGGGCGTCGT 2136 Query 161949 CAGCCTGCTGTGGGAGACCTTCGGCGGCACCACCAACGCCGAGGGCTACCGCGAGCTGGA 162008 | || || ||| ||||||| ||| ||||| | |||||| | | ||| || Sbjct 2135 CGAACTCCTCGACGAGCTCTTCGGCCACACGGTCAACGACCAGGGCTTCAAGGTGCTCGA 2076 Query 162009 CCCGCACATCGGTGCCATCTACGGCGACAGCATCACGCTCGATCGCGCACAGGCGATCCT 162068 || ||||||||| | ||||||||||||||||||||| ||||| || || | |||| Sbjct 2075 CCAGCACATCGGCGTCATCTACGGCGACAGCATCACCCTCGACCGTGCCCGCCGGATCTA 2016 Query 162069 GGCCAACCT-GCAGCGTCAGGGCTTCGCTGCCAGTAACGTCGTGTTCGGCGTGGGCAGCT 162127 | ||| || ||| |||||| | | | ||| ||||| ||||| | || | Sbjct 2015 CGAGCGCCTCGCCGCG-AAGGGCTACTCGAGCGACAACATCGTGCTCGGCATCGGGTCGT 1957 Query 162128 ACACGTACCAGTACAACACCCGCGACACGTTCGGTTCAGCAATGAAGGCGACGTGGGCGC 162187 ||||||||||||||| || || |||| |||| || ||||||| || ||||| | Sbjct 1956 ACACGTACCAGTACATGACGCGGGACAACCTCGGCAGCGCCGTGAAGGCCACCTGGGCAC 1897 Query 162188 AGGTCAACGGCAAGGGCGTGAACCTGTTCAAGGACCCGATCACCGACGACGGGACCAAGA 162247 |||| ||||| || ||| || | |||||||||| |||| | ||| ||||| Sbjct 1896 TGGTCGACGGCGAGCCCGTCGACATCCAGAAGGACCCGAAGACCGGCAGCGG---CAAGA 1840 Query 162248 AGAGCGCCACGGGTCGCTTGGCCGTACTGGGCGGCGACG-GT--GAGGACTTCTACCTGG 162304 ||||||||| ||| ||| | ||| ||| | |||||| || | || || | | Sbjct 1839 AGAGCGCCAAGGGCCGCATCGCC---CTGCACCGCGACGAGTCGGGCGAGATCCGGCAGA 1783 Query 162305 TGGAGAAGGCCGACGCCGAGACCGAGCAGCGCAGCGCGCTGCAGCCCGTCTGGAGGAACG 162364 || |||| |||||| |||| | |||| ||| ||||| || ||| ||| Sbjct 1782 CCGACCAGGCGACCGCCGACGACGAGGCGACCAGCCTGCTCCAGCCGGTGTGGGTCGACG 1723 Query 162365 GGCACTTCACCCAGCACCAGAGCTTCGCCGAGGTTCGCGA 162404 | | |||||| | | |||| |||||||| || ||||| Sbjct 1722 GACGCTTCACGCGCCTCCAGTCGTTCGCCGACGTCCGCGA 1683 >seq61823 Length=3776 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 110993 CGGCCCTGGCCGTGGCTCCGGCGGCGGCTCGCTGGTGAACTACCTGCTGGGCATCACCTC 111052 |||||| || ||||| ||||| | ||| ||| ||||| ||| | || |||||||| Sbjct 1488 CGGCCCGGGTCGTGGTTCCGGTGCCGGTTCGATGGTGGCGTACGCGATGCGCATCACCGA 1547 Query 111053 GCTCGACCCGATCAAGTACGACCTGTCGTTCGAGCGGTTCATCAACCCCGACCG 111106 |||||||||||| | ||| ||| |||||||||||| ||||||| ||||| Sbjct 1548 CCTCGACCCGATCCGGCACGGGCTGATCTTCGAGCGGTTCCTCAACCCGGACCG 1601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 526179332993280