Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq32996 118 1e-21 seq24164 104 2e-17 seq6200 102 8e-17 seq46021 95.1 1e-14 seq16715 93.3 4e-14 seq6347 89.7 5e-13 >seq32996 Length=3898 Score = 118 bits (130), Expect = 1e-21 Identities = 164/226 (73%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 138392 CTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAG 138451 ||| ||||||||| || ||||| | |||||||||| || ||||| ||||| | || Sbjct 866 CTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAG 925 Query 138452 TACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATAC 138511 | | | |||||| ||||||||||| | | |||| | ||||| ||||| || || |||| Sbjct 926 TCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATAC 985 Query 138512 CTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTC 138569 | || ||||| ||| | |||| ||| |||| || | ||| || | ||| ||||| Sbjct 986 CCTCCTTGTC-TTGAATCTTTGCTTTGACATTG-TCAATGGTATCTGAACTCTCAACCTC 1043 Query 138570 GACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | || | || || ||||||| ||| || |||||||| |||||| Sbjct 1044 CAATGTAATTGTCTTCCCAGTCAAAGTCTTGACAAAAATTTGCATG 1089 Score = 96.9 bits (106), Expect = 3e-15 Identities = 112/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| ||||||||| || ||||| | |||||||||| || ||||| ||||| Sbjct 492 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCA 551 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| | | |||||| ||||||||||| | | |||| | ||||| ||||| || || Sbjct 552 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 611 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT 138537 ||||| || ||||| ||| | |||| ||| Sbjct 612 ATACCCTCCTTGTC-TTGAATCTTTGCTTT 640 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 138397 AAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGC 138456 |||||||| || ||||| | |||||||||| || ||||| ||||| | ||| | | Sbjct 666 AAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAGTCCTC 725 Query 138457 GAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCT 138516 |||||| ||||||||||| | | |||| | |||||| || || || || ||||| || Sbjct 726 CCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGCTCTGGGGGAATACCCTCC 785 Query 138517 TTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCG 138574 ||||| ||| | |||| ||| |||| || | ||| || | ||| ||||| | | Sbjct 786 TTGTC-TTGAATCTTTGCTTTGACATTG-TCAATGGTATCTGAACTCTCAACCTCCAATG 843 Query 138575 TCAGCGTTTTACCAGTCAGAG 138595 | | || || ||||||| || Sbjct 844 TAATTGTCTTCCCAGTCAAAG 864 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||| || | || || || || || ||||| || | | Sbjct 1807 GACTCCTTTTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCA 1866 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || |||||||| ||||| ||| |||| | ||| | Sbjct 1867 AAGATCAGCCTCTGCTGGTCTGGGGGAATACCTTCCTTGTCT-TGAATTTTAGCTTTGAC 1925 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | |||||| | ||| ||||| | || | || || || ||||||||||| Sbjct 1926 ATTATCAATGGTGTCTGAGCTCTCGACCTCAAGAGTTATAGTCTTTCCGGTCAGAGTTTT 1985 Query 138600 TACAAAAATCTGCAT 138614 ||||| || ||||| Sbjct 1986 AACAAAGATTTGCAT 2000 >seq24164 Length=196930 Score = 104 bits (114), Expect = 2e-17 Identities = 144/194 (74%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 138425 CCTTT-TGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 ||||| ||||||||||| || ||| | |||||| || ||||| || || |||| | Sbjct 29745 CCTTTCTGAATGTTGTAATCAGCT-AGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAA 29687 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--AAT 138540 ||| | ||||| |||||||| || |||||||| ||||| ||| | || | ||| || Sbjct 29686 GATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTC-TTGAATCTTAGCTTTGACAT 29628 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | |||||| |||| || || |||| ||| | ||| || || || |||||||| Sbjct 29627 TG-TCAATAGTGTCGCTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTTTTC 29569 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 29568 ACGAAGATCTGCAT 29555 >seq6200 Length=22545 Score = 102 bits (112), Expect = 8e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| | |||||| ||||| || || || |||| Sbjct 22099 TTGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGG 22158 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || | |||||| ||||| || || || ||||| ||||| ||| || ||| | Sbjct 22159 CGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGA 22218 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||||| ||||| ||||| | || | ||| || || || || |||| Sbjct 22219 CATTATCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTT 22278 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 22279 TCACGAAGATCTGCAT 22294 >seq46021 Length=44830 Score = 95.1 bits (104), Expect = 1e-14 Identities = 143/197 (73%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 |||||||| || ||||||||||| ||| | || || |||||||| || ||||||| Sbjct 38771 GACTCCTTCTGGATGTTGTAGTCAGCTAGT-GTTCGTCCATCCTCGAGCTGCTTACCGGC 38713 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || | ||||||||||| || || || ||||| ||||| ||| | || | ||| Sbjct 38712 GAAAATCAATCGCTGTTGGTCTGGTGGAATGCCTTCCTTGTC-TTGAATCTTAGCCTTAA 38654 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||| | || | || || || ||||| || Sbjct 38653 CATTG-TCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTC 38595 Query 138598 TTTACAAAAATCTGCAT 138614 || ||||| |||||||| Sbjct 38594 TTCACAAAGATCTGCAT 38578 >seq16715 Length=90750 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||| || || || | | |||||||||| || |||||||| || Sbjct 65781 CCACCACGGAGACGCAGGACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCA 65840 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || |||||| || || || |||| | |||| | | ||| ||||| || || Sbjct 65841 AGGGTCCGGCCGTCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGTGGA 65900 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTA--ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||| | ||| |||| || | |||||| | |||| Sbjct 65901 ATACCTTCTTTGTC-CTGAATTTTGGCCTTAACATTG-TCAATGGTGTCAGAACTTTCCA 65958 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || ||||||| || || ||||| || ||||| Sbjct 65959 CCTCAAGGGTAATAGTCTTGCCAGTCAAGGTCTTCACAAAGATTTGCAT 66007 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||| || | | |||||| || || |||||||| |||| | Sbjct 55033 GACTCCTTCTGGATATTGTAATCAGTGAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCA 55092 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| || | ||| ||||| ||||| || || || ||||| ||| || | |||| Sbjct 55093 AAGATCAGTCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTA-GCCTTAAC 55151 Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| | | |||||| | |||||||| | || | |||||| ||||| || || | Sbjct 55152 GTTGT-CAATGGTGTCTGAACTTTCCACCTCAAGGGTGATCGTTTTTCCAGTGAGGGTCT 55210 Query 138599 TTACAAAAATCTGCAT 138614 | || ||||||||||| Sbjct 55211 TGACGAAAATCTGCAT 55226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| |||||||||||||| || | || || ||| || ||||| || |||| | Sbjct 66498 GACTCTTTTTGAATGTTGTAATCAGCGAGGGTCCGGCCGTCTTCAAGTTGCTTGCCGGCA 66557 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| || | || ||||| || || || ||||| ||||| ||| || || | | Sbjct 66558 AAGATCAGCCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAACA 66617 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | |||||| | |||||||||| || | || || ||||| || ||||| Sbjct 66618 TTG-TCAATGGTGTCTGAGCTTTCCACCTCGAGGGTGATTGTCTTTCCAGTGAGGGTTTT 66676 Query 138600 TACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 66677 GACAAAGATCTGCAT 66691 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/196 (70%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| ||||||||||| || ||| | || || || || || || | | Sbjct 65358 GACTCCTTTTGGATGTTGTAGTCCGCCAGAGTCCTTCCATCTTCAAGCTGCTTCCCTGCA 65417 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG--TTTTA 138538 |||| || | ||| |||||||| || || || || ||||| ||| | || | || Sbjct 65418 AAGATCAGCCTCTGCTGGTCCGGCGGGATTCCCTCCTTGTC-CTGAATCTTAGCCTTCAC 65476 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||| || | ||||||||| | || | ||||| ||||||| || | Sbjct 65477 ATTG-TCAATGGTATCAGAACTCTCCACCTCCAAAGTGATGGTTTTCCCAGTCAAGGTCT 65535 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||||||||| Sbjct 65536 TCACAAAAATCTGCAT 65551 >seq6347 Length=16439 Score = 89.7 bits (98), Expect = 5e-13 Identities = 141/197 (72%), Gaps = 4/197 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 ||||||||||| ||||||||||| ||| | ||| | ||||| | |||||||||| Sbjct 13278 GACTCCTTTTGTATGTTGTAGTCAGCT-AGAGTTCTTCCATCCTCCAACTGTTTACCGGC 13336 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | |||| | | ||| || || ||||| || ||||| ||||| ||||||| || | Sbjct 13337 AAAGATCAATCTCTGCTGATCTGGAGGAATTCCTTCCTTGTCTTGGATTTTTGCCTTGAC 13396 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||| ||||| | || | || || || |||| |||| Sbjct 13397 ATTG-TCAATAGTGTCAGAGCTCTCAACCTCAAGAGTAATTGTCTTCCCGGTCAAGGTTT 13455 Query 138599 TTACAAAAATCTGCATG 138615 | ||||| ||||||||| Sbjct 13456 TCACAAAGATCTGCATG 13472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495867474382080