Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq63545 114 3e-21 >seq63545 Length=90175 Score = 114 bits (126), Expect = 3e-21 Identities = 245/360 (68%), Gaps = 11/360 (3%) Strand=Plus/Minus Query 8770 CTCGGGATGATTGTCGTTGACTACCTGCAGCTGATG---TCGGGTGACGGCGGCGGATCT 8826 ||| | ||| | ||| | |||||||||||||||||| ||||| | | || || Sbjct 71248 CTCCGCATGGTCGTCATCGACTACCTGCAGCTGATGACCTCGGGCAA-GAAGGTCGA--- 71193 Query 8827 GAAATGCGGGCCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAA 8886 || || || | |||||| |||| | ||||| || ||||| | || ||||||||| Sbjct 71192 GAGTCGCCAGCAA--GAGGTCTCCGAGTTCTCGCGTGCGCTCAAGCTCATGGCGAAGGAA 71135 Query 8887 CTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAAC 8946 || | || || || | || ||||||||||| || || || | |||| | || | || Sbjct 71134 CTGCAGGTCCCCGTCGTGGCCCTGTCGCAGCTGAACCGTGGTCCCGAGCAGCGGGCCGAC 71075 Query 8947 AAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTG 9006 ||| ||| | || ||||| ||||| || || || ||||||||||||| |||||| || Sbjct 71074 AAGAAGCCGATGATCTCCGACCTGCGTGAATCCGGCTCGATCGAGCAGGACGCCGACATG 71015 Query 9007 ATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCC 9066 || || | | ||||||| || || | |||| | | | ||| ||| Sbjct 71014 GTCATCCTGCTGCACCGCGAGTCGGCGTACGAGAAGGACAACCCGCGGCAGGGTGAGGCG 70955 Query 9067 GAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGT-ACGGCTCGCATTCCA 9125 || ||||| | |||||||| || ||||| |||| | |||| | |||| | || ||||| Sbjct 70954 GACCTCATCGTGGCGAAGCACCGCAACGGACCGACGGACACCATCACGG-TGGCGTTCCA 70896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127449174250944