Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq63299 82.4 9e-11
>seq63299
Length=13169
Score = 82.4 bits (90), Expect = 9e-11
Identities = 244/368 (66%), Gaps = 10/368 (3%)
Strand=Plus/Minus
Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763
|||||| || ||||| | || | || |||||| ||||| || || || |||||
Sbjct 6939 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 6880
Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823
| || | || || || | ||||| |||||||| |||||||| ||||| || |
Sbjct 6879 AACAACTATTATACCAGTATTTCCTTCGAAACCATCCATTTCAGTCAATAGTTGGTTCAG 6820
Query 12824 GGTTTGTTCACGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 12880
||| ||||| | ||||||||| | | || | ||| | | || |||| || ||
Sbjct 6819 GGTCTGTTCCCTTTCATCATTTCCTCCTCCAATTCCAGTCCCTCT---TTGCCGCCCAAC 6763
Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGA 12939
|| |||||||| |||| || || || || || |||||| ||| ||| ||| |
Sbjct 6762 AGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA-A 6704
Query 12940 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAAC 12999
||| || |||| ||| || ||||| ||||||||||| || || | | | | |||
Sbjct 6703 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAGCCTGAA- 6645
Query 13000 ATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCC 13058
|||| || || || || | |||||| || || || || || | ||| |||||
Sbjct 6644 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCA 6585
Query 13059 GTCCCTGG 13066
|| || ||
Sbjct 6584 GTACCAGG 6577
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613018970970240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |