Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq24164 125 8e-24 seq6200 116 4e-21 seq63460 111 2e-19 seq46021 111 2e-19 seq16715 111 2e-19 seq32996 93.3 5e-14 seq6347 89.7 6e-13 seq43689 82.4 9e-11 >seq24164 Length=196930 Score = 125 bits (138), Expect = 8e-24 Identities = 149/201 (74%), Gaps = 1/201 (0%) Strand=Plus/Minus Query 46398 TACTCTCCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 |||| ||||| || || ||||| || | |||||| || | || ||||||||||| ||| Sbjct 29751 TACTTACCTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCG 29692 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| ||||| ||||||||||| | || | | |||||||| ||||| ||| Sbjct 29691 GCGAAGATCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTG 29632 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||||||||||| || || | |||||| || || ||||| || ||| Sbjct 29631 ACATTGTCAATAGTGTCGCTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTT 29572 Query 46577 TTAACAAAGATTTGCATTTTG 46597 || || ||||| ||||||||| Sbjct 29571 TTCACGAAGATCTGCATTTTG 29551 >seq6200 Length=22545 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||| ||||| | || |||||| ||||| |||||||||| ||||| || | Sbjct 22079 ACGGAGCACGAGATGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACC 22138 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || |||||||| |||||||| ||||| ||||||||||| | || | | ||||| Sbjct 22139 ATCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTT 22198 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| |||| | | | |||||| || || || || | ||||| Sbjct 22199 GTCCTGGATCTTGGCTTTGACATTATCGATGGTGTCGGAAGACTCAACCTCTAGGGTGAT 22258 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || ||||| || ||||| || ||||| ||||| || Sbjct 22259 CGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 22297 >seq63460 Length=19418 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| |||||||| | ||| || || | || ||||||||||| || ||||| Sbjct 4945 CTCCTTTTGGATGTTGTAGTCAGCTAGCGTTCGGCCATCCTCGAGCTGCTTTCCTGCGAA 5004 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||||||| ||||| ||| | | Sbjct 5005 AATCAACCTCTGCTGGTCTGGTGGAATGCCTTCCTTGTCCTGAATCTTAGCCTTCACATT 5064 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | || || || |||||||| || || || || Sbjct 5065 GTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTTAGGGTCTTCAC 5124 Query 46582 AAAGATTTGCATTTTGCAC 46600 |||||| |||||||| ||| Sbjct 5125 AAAGATCTGCATTTTTCAC 5143 >seq46021 Length=44830 Score = 111 bits (122), Expect = 2e-19 Identities = 144/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| | ||| || || | || ||||||||||| |||||||| Sbjct 38769 CTCCTTCTGGATGTTGTAGTCAGCTAGTGTTCGTCCATCCTCGAGCTGCTTACCGGCGAA 38710 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||| ||||| | || | || |||||||| ||||| ||| | | Sbjct 38709 AATCAATCGCTGTTGGTCTGGTGGAATGCCTTCCTTGTCTTGAATCTTAGCCTTAACATT 38650 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| || || || || | || || || ||||||||||| || || || Sbjct 38649 GTCAATGGTGTCTGATGACTCTACCTCTAAGGTAATAGTCTTGCCCGTCAGGGTCTTCAC 38590 Query 46582 AAAGATTTGCATTTTGCAC 46600 |||||| |||||||| ||| Sbjct 38589 AAAGATCTGCATTTTTCAC 38571 >seq16715 Length=90750 Score = 111 bits (122), Expect = 2e-19 Identities = 152/207 (73%), Gaps = 9/207 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || |||||||| |||| |||||| || |||| || ||||||||||| || || Sbjct 66728 CTCCTTCTGAATATTGTAATCGGCTAGAGTACGGCCGTCTTCAAGCTGCTTGCCTGCAAA 66787 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || ||||||||| |||||| ||| | ||| Sbjct 66788 GATCAGCCTCTGCTGGTCCGGGGGTATGCCTTCCTTGTCCTGGATCTT-GGCTTTAACGT 66846 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| ||| |||||| || | ||||| || || || || || |||| Sbjct 66847 TGTCAATGGTGTCTGAGCT---TTCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTT 66903 Query 46578 TAACAAAGATTTGCAT-TTTGCACAAA 46603 | |||||||| ||||| | | |||||| Sbjct 66904 TGACAAAGATCTGCATCTGTACACAAA 66930 Score = 89.7 bits (98), Expect = 6e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || ||||| ||| |||||||||||| |||||||| | | ||| | | || ||| Sbjct 53903 ACAAGGTGCAAAGTAGACTCCTTTTGGATGTTGTAGTCAGCCAAAGTCCTACCATCTTCG 53962 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| | |||||| || | || | | |||||||||| Sbjct 53963 AGCTGCTTCCCTGCAAAGATCAGCCTCTGCTGATCTGGTGGGATTCCCTCCTTGTCCTGA 54022 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||||| ||| | ||| | | | || || |||| ||| | |||| |||||||| Sbjct 54023 ATCTTGGCCTT-AACGTTGTCAATAGTATCAGAGCTC---TCCGCCTCCAAAGTGATGGT 54078 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| || |||| || || ||||| || ||||| Sbjct 54079 TTTCCCAGTCAAGGTCTTCACAAAAATCTGCAT 54111 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| ||||| || | || || || |||| || |||||||||||||| || Sbjct 66273 TCCTTCTGGATGTTGTAATCAGCAAGGGTCCGGCCGTCCTCAAGCTGCTTGCCGGCAAAG 66332 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 |||| | |||||||| | || | || ||||||||| |||||| ||| | | Sbjct 66333 ATCAGCCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATTG 66392 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| ||| || || | |||||||| || || |||| || || || Sbjct 66393 TCAATGGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTTCCTGTCAAAGTCTTCACG 66452 Query 46583 AAGATTTGCATT 46594 || ||||||||| Sbjct 66453 AAAATTTGCATT 66464 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||||||||| || | ||||| || | || || || || || ||||| || Sbjct 55035 CTCCTTCTGGATATTGTAATCAGTGAGAGTACGGCCATCTTCAAGTTGTTTTCCGGCAAA 55094 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | ||||||||| | || | || |||||||||| |||||| ||| | ||| Sbjct 55095 GATCAGTCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTT-AACGT 55153 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| |||||| || | ||||| ||||| || || || || || | Sbjct 55154 TGTCAATGGTGTCTGAACTTTCCACCTCAAGGGTGATCGTTTTTCCAGTGAGGGTCTTGA 55213 Query 46581 CAAAGATTTGCAT 46593 | || || ||||| Sbjct 55214 CGAAAATCTGCAT 55226 Score = 82.4 bits (90), Expect = 9e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| || | | |||||| ||||| | || ||||| || |||||||| |||| Sbjct 54113 CCTCCCCTGAGCCTCAACACAAGATGAAGGGTCGATTCCTTCTGAATATTGTAATCGGCC 54172 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | | || || | |||||| || || || ||||| | |||||||| | || Sbjct 54173 AGTGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTTTGCTGGTCTGGAGGG 54232 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | || ||| |||||| ||||| ||| | | | | ||||| ||| |||| Sbjct 54233 ATGCCCTCTTTGTCCTGAATCTTGGCCTTAACATTGTCGATGGTGTCAGAGCT---TTCC 54289 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | || || || ||||| |||| ||||| |||||||||||||| Sbjct 54290 ACCTCGAGGGTAATAGTCTTGCCAGTCAAGGTTTTGACAAAGATTTGCAT 54339 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| ||||| || ||||| || | || || || |||| || || ||||||||||| || Sbjct 66500 CTCTTTTTGAATGTTGTAATCAGCGAGGGTCCGGCCGTCTTCAAGTTGCTTGCCGGCAAA 66559 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| | |||||||| | || | || ||||||||| |||||| ||| | | Sbjct 66560 GATCAGCCTTTGCTGGTCTGGGGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTAACATT 66619 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| |||||| || | ||||| || || || || || ||||| Sbjct 66620 GTCAATGGTGTCTGAGCT---TTCCACCTCGAGGGTGATTGTCTTTCCAGTGAGGGTTTT 66676 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 66677 GACAAAGATCTGCAT 66691 >seq32996 Length=3898 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||||||||||| ||| | || |||||| ||||| || ||||| | Sbjct 492 CCTCCTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCA 551 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | |||| || || || || || || || ||||| ||||||||||| | || Sbjct 552 AGAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGA 611 Query 46487 ACGCTCTCCTTGTC 46500 | | ||||||||| Sbjct 612 ATACCCTCCTTGTC 625 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 46368 CTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATA 46427 || |||||||||||||||||| ||| | || |||||| ||||| || ||||| | | Sbjct 658 CTNCTCTTAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAA 717 Query 46428 GAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCA 46487 |||| | | |||| || || || || || || || ||||| |||||||| || | || | Sbjct 718 GAGTCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAAACGCTGCTGCTCTGGGGGAA 777 Query 46488 CGCTCTCCTTGTC 46500 | ||||||||| Sbjct 778 TACCCTCCTTGTC 790 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 46371 CTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAG 46430 |||| ||||||||||||| ||| | || |||||| ||||| || ||||| | |||| Sbjct 866 CTCTCAAACGCAACACCAAATGGAGAGTTGACTCCTTCTGGATGTTATAGTCTGCAAGAG 925 Query 46431 TGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGC 46490 | | | |||| || || || || || || || ||||| ||||||||||| | || | | Sbjct 926 TCCTCCCGTCCTCAAGTTGTTTACCAGCAAAGATCAATCGCTGCTGGTCTGGGGGAATAC 985 Query 46491 TCTCCTTGTC 46500 ||||||||| Sbjct 986 CCTCCTTGTC 995 >seq6347 Length=16439 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 |||||||| ||||| | ||||| ||| | ||| ||| || ||||||||||| || | Sbjct 12561 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCA 12620 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| | | || || ||||||||||| || || || || ||||||||||| | || Sbjct 12621 AGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 12680 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | || ||||| |||||| ||| | | | | ||||| ||| || Sbjct 12681 ATCCCTTCTTTGTCTTGGATCTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCAACC 12740 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || ||||| || | || || ||||| || ||||| Sbjct 12741 TCCAGGGTGATTGTCTTGCCGGTTAATGTCTTCACAAAAATCTGCAT 12787 >seq43689 Length=21515 Score = 82.4 bits (90), Expect = 9e-11 Identities = 139/198 (70%), Gaps = 10/198 (5%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | || ||||| | || || |||||||| || || || Sbjct 2625 CTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGTCCATCTTCAAGCTGCTTACCAGCAAA 2566 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTT--CTTCTTGAGC 46519 |||| | ||||||||| | || | | ||| |||||| ||||| ||| | Sbjct 2565 GATCAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCCTGAATCTTAGCTTTCACATT 2506 Query 46520 GTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 |||| | ||||| ||| ||||| |||| |||||||| || || || | || Sbjct 2505 GTCG--ATGGTGTCAGAACTC---TCCACCTCCAAGGTGATGGTCTTACCGGTTAAGGTC 2451 Query 46577 TTAACAAAGATTTGCATT 46594 || |||||||| |||||| Sbjct 2450 TTCACAAAGATCTGCATT 2433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564788583281280