Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6347 98.7 7e-16 seq16715 86.0 4e-12 seq43689 84.2 2e-11 >seq6347 Length=16439 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || |||| |||||| || |||||||| | ||| ||||| || ||||| ||||| || Sbjct 12561 CCTCCTCTCAAACGGAGCACCAAATGGAGTGTGGACTCTTTCTGGATATTGTAATCAGCA 12620 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | |||| || | || || || ||||||||||||||||||| || | || Sbjct 12621 AGAGTCCTACCATCCTCAAGCTGCTTGCCAGCAAAAATTAAACGCTGCTGGTCTGGTGGA 12680 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||||||||| || ||| || | | | | ||||||| ||||| || Sbjct 12681 ATCCCTTCTTTGTCTTGGATCTTTGCCTTCACGTTATCAATGGTGTCTGAACTTTCAACC 12740 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| || ||||| || || ||||| || || || || |||||||| Sbjct 12741 TCCAGGGTGATTGTCTTGCCGGTTAATGTCTTCACAAAAATCTGCAT 12787 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || |||| ||| || || | || | ||| || |||||||| || || || || Sbjct 13244 GCCACCACGCAGACGAAGGACAAGGTGGAGTGTGGACTCCTTTTGTATGTTGTAGTCAGC 13303 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 | | | | |||| ||||| ||||| ||| |||| || || | ||||||||| | || Sbjct 13304 TAGAGTTCTTCCATCCTCCAACTGTTTACCGGCAAAGATCAATCTCTGCTGATCTGGAGG 13363 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||| ||||| |||||| || | | ||| || ||||| | ||| || Sbjct 13364 AATTCCTTCCTTGTCTTGGATTTTTGCCTTGACATTGTCAATA--GTGTCAGAGCTCTCA 13421 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || || | ||||||||| || || || || ||||| || |||||||||||| Sbjct 13422 ACCTCAAGAGTAATTGTCTTCCCGGTCAAGGTTTTCACAAAGATCTGCATG 13472 >seq16715 Length=90750 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | ||| || ||||| || | ||| || || || ||||| |||| Sbjct 66689 CATC-CCACCACGAAGACGGAGCACCAAGTGGAGAGTTGACTCCTTCTGAATATTGTAAT 66747 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| | | || | || || | || || || |||| || | | |||||| |||| Sbjct 66748 CGGCTAGAGTACGGCCGTCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCCG 66807 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTT 39666 ||||| |||||| ||||| || || ||||| ||| | | || |||||| |||| Sbjct 66808 GGGGTATGCCTTCCTTGTCCTGGATCTTGGCTTTAA-CGTTGTCAATGGTGTCTGAGCTT 66866 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | || || || || || || | ||||| || ||||||||||| Sbjct 66867 TCCACCTCAAGGGTGATAGTCTTTCCAGTGAGGGTTTTGACAAAGATCTGCAT 66919 >seq43689 Length=21515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | || || || || || || || || || Sbjct 1748 CCACCACGGAGACGGAGCACCAAATGTAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCT 1689 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| ||||| ||||| || |||| || || | |||||| || | ||| Sbjct 1688 AGGGTGCGGCCATCTTCCAACTGTTTTCCTGCAAAGATCAACCTCTGCTGGTCTGGGGGA 1629 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | |||||| || || || || |||| ||| | | || |||||| |||||| || Sbjct 1628 ATGCCTTCCTTATCCTGGATCTTAGCCTTAA-CGTTGTCAATGGTGTCTGAGCTTTCGAC 1570 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | ||||| || |||||||| | || || |||||||||||||| Sbjct 1569 CTCAAGGGTAATCGTCTTACCCGTAAGTGTCTTAACGAAGATCTGCAT 1522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347100074190512