Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq63210 307 4e-79 seq63378 158 5e-34 >seq63210 Length=11074 Score = 307 bits (340), Expect = 4e-79 Identities = 737/1106 (67%), Gaps = 47/1106 (4%) Strand=Plus/Plus Query 53349 TGCCTTTCGTTTATCCGCATGTGGCGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCA 53408 |||| ||||| | ||||| |||| || ||||| || || || |||| ||| || Sbjct 6804 TGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCA 6863 Query 53409 GTGTCGGCACGGTGATCCCGACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATA 53468 || ||| |||| ||||||||| ||||| | || ||||||||||||||||| || | Sbjct 6864 CCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACA 6923 Query 53469 TTGGCTGCGGCATGATCGCAGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTCA 53528 | ||||||||||||||||| | ||| ||| || |||| | ||| || | | | Sbjct 6924 TCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCT---GCCCACCG 6980 Query 53529 AGCTGTCGGATCTGCGGGAGTCGATCGAGTCCGCTATCCCGATGAGCGCCGGGGGATACA 53588 | ||| || || || ||| ||||||| || |||||| || ||| |||| | | Sbjct 6981 ACCTGCAGGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGA 7040 Query 53589 AC---AAGAGCCTGA--ACCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTGCAGCT 53643 || |||| | | |||| ||| | | ||| ||| || | || | Sbjct 7041 ACCGGAAGATCGTCGCCACCGCC--GAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGA 7098 Query 53644 CGTCGCTACCCGGTTCGACGTCGACCTGTCTCACTCCCCGAAGTGGCGGGAGCAGCTCGG 53703 | ||| | | |||||| || | | | | | | || ||||||| | |||||||| Sbjct 7099 GGCCGC---CGGCTTCGACCCCG--CGGGCGCGCACGGCGG-GTGGCGGAACCAGCTCGG 7152 Query 53704 CACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGCGTGTG 53763 ||||| || ||||| |||||||||||| | | ||||||| | | |||| || || Sbjct 7153 GACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGACGAGCAGGACCAGGTCTG 7212 Query 53764 GTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACATTCA 53823 | |||||||||||||||| || || |||||||| ||||||||||| ||| |||||| Sbjct 7213 GCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACATCAC 7272 Query 53824 GGCCGCGCAG--GGCTATTGCCTCGCCAATGGGCTGCACGTGCCACACAAGGATCTGGCG 53881 | |||| || ||| || | || ||| | | |||| || || |||||| Sbjct 7273 GATCGCGAAGAAGGCGATGGAG-CGGTGGTGGATCGAGC-TGCCGGACCCCGACCTGGCG 7330 Query 53882 TACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTACGTTGGGCGCAG 53941 |||||||||||||||||| |||||||||||| ||| ||| || | || ||||||||| Sbjct 7331 TACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCAG 7390 Query 53942 CGGTTTGCGTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTTCCGC--- 53998 | || ||| | |||||||| || ||||||||||| ||| | | | | ||| Sbjct 7391 CACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCTGCGCGAG 7450 Query 53999 --CATTGGGTCGGCGCCGACCAGNNNNNNNNNNNNNNNNNNNNNACCATCAACGCGCACC 54056 ||| || || ||| | || |||||| |||| Sbjct 7451 GTCAT--GGACGCGCCCGTCGAGGAGCTCGAGCGA------------ATCAACTGCCACC 7496 Query 54057 ACAACTACACGCAGAAGGAGCGGCAC-GGCGACCGTGACGTGTGGTTGACCCGTAAGGGT 54115 |||||| ||||||| ||| |||| || | || ||||||| || |||| ||||| Sbjct 7497 ACAACTTCACGCAGCGCGAGACGCACTGGGGGAAGTC-CGTGTGGGTGTCCCGGAAGGGC 7555 Query 54116 GCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCG 54175 |||||| | ||||| | ||| | |||||||| || || |||||||||||| ||| Sbjct 7556 GCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCCCGGGTCGATGGGCACCGCGTCG 7615 Query 54176 TATGTCGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGC---TCGGCGCCGCACGGTGCG 54232 || ||||| ||| ||||| | || ||| | | ||| ||||||||||||| Sbjct 7616 TACGTCGTCGAGGGCCTCGGCAA---CAAGCCGTCGCTCGAGTCGTCGCCGCACGGTGCC 7672 Query 54233 GGCCGCCGGTTCTCGCGCACGAAGGCACGCAAGCTGTTCACGGTCGACGACCTCGAAGCG 54292 || || | || |||||| || |||||| | ||||||| |||||| ||| ||| Sbjct 7673 GGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCACGCACGACGAGCTCCGGGCG 7732 Query 54293 CGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGATGAGATTCCCGACGCT 54352 ||| ||||||||||||||| | ||| |||| |||| ||||| || | || Sbjct 7733 GCCATGGTCGGCATCGAGTACCGCGACACCGACGCGTTCCTCGACGAGATCCCGGCGGCG 7792 Query 54353 TACAAGCCGATCGACGTTGTGATGCACGACGCCGAAACGCTGGTGTCGGTGGATGCCGAG 54412 ||||||||||||||| |||||| ||||||| || |||||| | | | Sbjct 7793 TACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGACCTCGTGTCGATCCGGCACACG 7852 Query 54413 CTGCGCCAGCTCTTGAACGTCAAGGG 54438 ||||| ||| || | ||||| ||||| Sbjct 7853 CTGCGGCAGATCGTCAACGTGAAGGG 7878 >seq63378 Length=15302 Score = 158 bits (174), Expect = 5e-34 Identities = 263/380 (69%), Gaps = 0/380 (0%) Strand=Plus/Plus Query 12572 ATCATGGACAACGCCCTGGCCGCGGTTGACAAGACGGCGTTCGGGCTCGACGAGGCCGCC 12631 |||||||||| ||||||| | || | ||| || ||||| |||| ||| || || Sbjct 11661 ATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCAGCT 11720 Query 12632 ACCACAGCGGCGTCCGCGGTGGCCGCCGGTATCGAGCCGGGCGAGCGGCTGACCGGCTAC 12691 | || || ||| || |||||||||||| |||| ||| || ||| || ||| Sbjct 11721 GGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAGTAC 11780 Query 12692 CTGAAAAGCGTCGCCGACACCGCGGCTATCGCGGGCACGTCAATGGCCGATATGGGCGCA 12751 || || | ||||||| | || | ||||| || || | | ||| |||||| | Sbjct 11781 CTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGCTCG 11840 Query 12752 ATCTTCAACAAGGTGCAGACCTCCGGCAAGGCGTTCACTGGCGATCTCAACATGCTTTCT 12811 ||| |||||||| | ||| |||||||| | ||| | | | |||||| ||| || Sbjct 11841 ATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTCGCT 11900 Query 12812 GACCGCGGCCTGCCGATATTCACTTGGCTGCAGGAGGAATACGGCGTAACCGGCGAGGCC 12871 ||||| ||| | ||||| ||| ||||||||| |||| |||||||| ||| ||| Sbjct 11901 GACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGACAAG 11960 Query 12872 CTCTCGAAGATGGTCAGCGAGGGCAAGGTCGACGCCGCGACATTCCAGAAGGTTGTTGCC 12931 |||||| ||||||| |||||||||||||| | || || |||| ||||| | | Sbjct 11961 CTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCATCGAG 12020 Query 12932 GAGCGCATCGGCGGCGCCGC 12951 ||| |||||||||||| || Sbjct 12021 GAGAACATCGGCGGCGCGGC 12040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190447910542080