Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_014458.1
Length=59598
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 307 4e-79
seq63378 158 5e-34
>seq63210
Length=11074
Score = 307 bits (340), Expect = 4e-79
Identities = 737/1106 (67%), Gaps = 47/1106 (4%)
Strand=Plus/Plus
Query 53349 TGCCTTTCGTTTATCCGCATGTGGCGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCA 53408
|||| ||||| | ||||| |||| || ||||| || || || |||| ||| ||
Sbjct 6804 TGCCGTTCGTGTTCCCGCACCTGGCCCTCATGCCGGACGCCCACCTCGGCCTCGGCGCCA 6863
Query 53409 GTGTCGGCACGGTGATCCCGACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATA 53468
|| ||| |||| ||||||||| ||||| | || ||||||||||||||||| || |
Sbjct 6864 CCGTGGGCTCGGTCATCCCGACCCTCGGCGCGATCATGCCGGCGGCCGTCGGCGTGGACA 6923
Query 53469 TTGGCTGCGGCATGATCGCAGCCCGCACCACGTACACGGCGAACGATCTTGAGGGCCTCA 53528
| ||||||||||||||||| | ||| ||| || |||| | ||| || | | |
Sbjct 6924 TCGGCTGCGGCATGATCGCGGTCCGGACCCAGTTCACGAAGGGCGACCT---GCCCACCG 6980
Query 53529 AGCTGTCGGATCTGCGGGAGTCGATCGAGTCCGCTATCCCGATGAGCGCCGGGGGATACA 53588
| ||| || || || ||| ||||||| || |||||| || ||| |||| | |
Sbjct 6981 ACCTGCAGGGGCTCCGCGAGCAGATCGAGCGGGCCATCCCGCTGTCCGCGGGGGCGTCGA 7040
Query 53589 AC---AAGAGCCTGA--ACCGTTTTGAGTTCACCGGCGCCCGGCTGGACTGGCTGCAGCT 53643
|| |||| | | |||| ||| | | ||| ||| || | || |
Sbjct 7041 ACCGGAAGATCGTCGCCACCGCC--GAGCCCCGCATCGCAGAGCTCGAGACGATGGCGGA 7098
Query 53644 CGTCGCTACCCGGTTCGACGTCGACCTGTCTCACTCCCCGAAGTGGCGGGAGCAGCTCGG 53703
| ||| | | |||||| || | | | | | | || ||||||| | ||||||||
Sbjct 7099 GGCCGC---CGGCTTCGACCCCG--CGGGCGCGCACGGCGG-GTGGCGGAACCAGCTCGG 7152
Query 53704 CACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGCGTGTG 53763
||||| || ||||| |||||||||||| | | ||||||| | | |||| || ||
Sbjct 7153 GACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGACGAGCAGGACCAGGTCTG 7212
Query 53764 GTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCGCGCAGAAGCACATTCA 53823
| |||||||||||||||| || || |||||||| ||||||||||| ||| ||||||
Sbjct 7213 GCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGATCGCCCAGCGGCACATCAC 7272
Query 53824 GGCCGCGCAG--GGCTATTGCCTCGCCAATGGGCTGCACGTGCCACACAAGGATCTGGCG 53881
| |||| || ||| || | || ||| | | |||| || || ||||||
Sbjct 7273 GATCGCGAAGAAGGCGATGGAG-CGGTGGTGGATCGAGC-TGCCGGACCCCGACCTGGCG 7330
Query 53882 TACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTACGTTGGGCGCAG 53941
|||||||||||||||||| |||||||||||| ||| ||| || | || |||||||||
Sbjct 7331 TACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACATCGCCGAGCTGCGGTGGGCGCAG 7390
Query 53942 CGGTTTGCGTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTTCCGC--- 53998
| || ||| | |||||||| || ||||||||||| ||| | | | | |||
Sbjct 7391 CACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACCGGGTCGTCCGGCAGCTGCGCGAG 7450
Query 53999 --CATTGGGTCGGCGCCGACCAGNNNNNNNNNNNNNNNNNNNNNACCATCAACGCGCACC 54056
||| || || ||| | || |||||| ||||
Sbjct 7451 GTCAT--GGACGCGCCCGTCGAGGAGCTCGAGCGA------------ATCAACTGCCACC 7496
Query 54057 ACAACTACACGCAGAAGGAGCGGCAC-GGCGACCGTGACGTGTGGTTGACCCGTAAGGGT 54115
|||||| ||||||| ||| |||| || | || ||||||| || |||| |||||
Sbjct 7497 ACAACTTCACGCAGCGCGAGACGCACTGGGGGAAGTC-CGTGTGGGTGTCCCGGAAGGGC 7555
Query 54116 GCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCACCTGTTCG 54175
|||||| | ||||| | ||| | |||||||| || || |||||||||||| |||
Sbjct 7556 GCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCCCCGGGTCGATGGGCACCGCGTCG 7615
Query 54176 TATGTCGTGACCGGCAAGGGCAATCCCGAGGCGTTGTGC---TCGGCGCCGCACGGTGCG 54232
|| ||||| ||| ||||| | || ||| | | ||| |||||||||||||
Sbjct 7616 TACGTCGTCGAGGGCCTCGGCAA---CAAGCCGTCGCTCGAGTCGTCGCCGCACGGTGCC 7672
Query 54233 GGCCGCCGGTTCTCGCGCACGAAGGCACGCAAGCTGTTCACGGTCGACGACCTCGAAGCG 54292
|| || | || |||||| || |||||| | ||||||| |||||| ||| |||
Sbjct 7673 GGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGTTCACGCACGACGAGCTCCGGGCG 7732
Query 54293 CGTATGACGGGCATCGAGTACCGCAAGGGCGAGGCGTGGGTCGATGAGATTCCCGACGCT 54352
||| ||||||||||||||| | ||| |||| |||| ||||| || | ||
Sbjct 7733 GCCATGGTCGGCATCGAGTACCGCGACACCGACGCGTTCCTCGACGAGATCCCGGCGGCG 7792
Query 54353 TACAAGCCGATCGACGTTGTGATGCACGACGCCGAAACGCTGGTGTCGGTGGATGCCGAG 54412
||||||||||||||| |||||| ||||||| || |||||| | | |
Sbjct 7793 TACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCGACCTCGTGTCGATCCGGCACACG 7852
Query 54413 CTGCGCCAGCTCTTGAACGTCAAGGG 54438
||||| ||| || | ||||| |||||
Sbjct 7853 CTGCGGCAGATCGTCAACGTGAAGGG 7878
>seq63378
Length=15302
Score = 158 bits (174), Expect = 5e-34
Identities = 263/380 (69%), Gaps = 0/380 (0%)
Strand=Plus/Plus
Query 12572 ATCATGGACAACGCCCTGGCCGCGGTTGACAAGACGGCGTTCGGGCTCGACGAGGCCGCC 12631
|||||||||| ||||||| | || | ||| || ||||| |||| ||| || ||
Sbjct 11661 ATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGCAGCT 11720
Query 12632 ACCACAGCGGCGTCCGCGGTGGCCGCCGGTATCGAGCCGGGCGAGCGGCTGACCGGCTAC 12691
| || || ||| || |||||||||||| |||| ||| || ||| || |||
Sbjct 11721 GGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAAGTAC 11780
Query 12692 CTGAAAAGCGTCGCCGACACCGCGGCTATCGCGGGCACGTCAATGGCCGATATGGGCGCA 12751
|| || | ||||||| | || | ||||| || || | | ||| |||||| |
Sbjct 11781 CTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGGCTCG 11840
Query 12752 ATCTTCAACAAGGTGCAGACCTCCGGCAAGGCGTTCACTGGCGATCTCAACATGCTTTCT 12811
||| |||||||| | ||| |||||||| | ||| | | | |||||| ||| ||
Sbjct 11841 ATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCTCGCT 11900
Query 12812 GACCGCGGCCTGCCGATATTCACTTGGCTGCAGGAGGAATACGGCGTAACCGGCGAGGCC 12871
||||| ||| | ||||| ||| ||||||||| |||| |||||||| ||| |||
Sbjct 11901 GACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGACAAG 11960
Query 12872 CTCTCGAAGATGGTCAGCGAGGGCAAGGTCGACGCCGCGACATTCCAGAAGGTTGTTGCC 12931
|||||| ||||||| |||||||||||||| | || || |||| ||||| | |
Sbjct 11961 CTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCATCGAG 12020
Query 12932 GAGCGCATCGGCGGCGCCGC 12951
||| |||||||||||| ||
Sbjct 12021 GAGAACATCGGCGGCGCGGC 12040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 190447910542080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |