Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq63210 295 3e-75 seq63378 165 3e-36 >seq63210 Length=11074 Score = 295 bits (326), Expect = 3e-75 Identities = 530/769 (69%), Gaps = 41/769 (5%) Strand=Plus/Plus Query 54398 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGA 54457 ||||||| | |||||||| ||||| || ||||| |||||||||||| | | |||||| Sbjct 7135 GTGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGA 7194 Query 54458 CCACCTCGACCGGGTGTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGAT 54517 | | | |||| ||| ||| |||||||||||||||| || || || ||||| |||||||| Sbjct 7195 CGAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGAT 7254 Query 54518 CGCGCAGAAGCACATTCAGGCCGCGCAG--GGCTATTGCCTCGCCAACGG-GCTGCA-CG 54573 ||| ||| |||||| | |||| || ||| || | | ||| | || | || Sbjct 7255 CGCCCAGCGGCACATCACGATCGCGAAGAAGGCGATGG-------AGCGGTGGTGGATCG 7307 Query 54574 ---TGCCGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACC 54630 ||||| || || |||||||||||||||||||||||| |||||||||||| ||| Sbjct 7308 AGCTGCCGGACCCCGACCTGGCGTACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACA 7367 Query 54631 TCGTCGAACTGCGCTGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAAATGATGGACC 54690 ||| ||| ||||| |||||||||| |||||| | |||||||| || |||||||||| Sbjct 7368 TCGCCGAGCTGCGGTGGGCGCAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACC 7427 Query 54691 GATTCGA---GCAGGCGTTC-AGG-CATTGGGTCGGCGCCGACCAGNNNNNNNNNNNNNN 54745 | ||| |||| | | ||| ||| || || ||| | || Sbjct 7428 GGGTCGTCCGGCAGCTGCGCGAGGTCAT--GGACGCGCCCGTCGAGGAGCTCGAGCGA-- 7483 Query 54746 NNNNNNNACCATCAACGCGCACCACAACTACACGCAAAAGGAGCGGCAC-GGCGACCGTG 54804 |||||| |||||||||| |||||| ||| |||| || | || Sbjct 7484 ----------ATCAACTGCCACCACAACTTCACGCAGCGCGAGACGCACTGGGGGAAGTC 7533 Query 54805 ATGTGTGGCTGACCCGTAAGGGGGCGATCGACGCGAACGCCGGTGTGCGGGGCCTGATTC 54864 |||||| || |||| ||||| |||||| | ||||| || || | |||||||| | Sbjct 7534 C-GTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCC 7592 Query 54865 CGGGCTCGATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGT 54924 | || |||||||||||| ||||| ||||| ||| || || | || ||| | Sbjct 7593 CCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAA---CAAGCCGTCGC 7649 Query 54925 GC---TCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGT 54981 | ||| ||||||||||||| || || | || |||||| || ||| || | || Sbjct 7650 TCGAGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGT 7709 Query 54982 TCACGGTCGACGACCTCGAGGCGCGTATGGCGGGCATCGAGTACCGCAAGGGCGAGGCGT 55041 ||||| |||||| ||| |||| |||| ||||||||||||||| | ||| |||| Sbjct 7710 TCACGCACGACGAGCTCCGGGCGGCCATGGTCGGCATCGAGTACCGCGACACCGACGCGT 7769 Query 55042 GGGTCGACGAGATTCCCGACGCATACAAGCCGATCGACGTCGTGATGCACGACGCCGAAA 55101 |||||||||| || | || ||||||||||||||| |||||| ||||||| Sbjct 7770 TCCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCG 7829 Query 55102 CGCTGGTGTCGGTGGATGCCGAGCTGCGGCAGCTCTTGAACGTCAAGGG 55150 || |||||| | | |||||||||| || | ||||| ||||| Sbjct 7830 ACCTCGTGTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 7878 >seq63378 Length=15302 Score = 165 bits (182), Expect = 3e-36 Identities = 267/384 (70%), Gaps = 0/384 (0%) Strand=Plus/Plus Query 12571 GTCGATTATGGACAACGCCCTGGCGGCCGTCGACAAGACGGCGTTCGGGCTCGACGAGGC 12630 |||||| ||||||| ||||||| | ||||| | ||| || ||||| |||| ||| || Sbjct 11657 GTCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGC 11716 Query 12631 TGCCACCACAGCGGCGTCCGCGGTGGCCGCCGGGCTTGAGCCGGGCGAGCAGCTCACTGG 12690 || | || || ||| || |||||||| | |||| ||| || |||||| Sbjct 11717 AGCTGGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAA 11776 Query 12691 CTACTTGAAAACCGTCGCAGACACGGCCGCTATCGCCGGTACCTCAATGGCCGACATGGG 12750 ||| | || | ||| ||| ||||| | ||||| ||| ||| | | ||| ||||| Sbjct 11777 GTACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGG 11836 Query 12751 CGCAATCTTCAACAAGGTGCAGACGTCAGGCAAGGCGTTTACCGGCGATCTCAACATGCT 12810 | | ||| |||||||| | || ||||||| | || | | | |||||| ||| Sbjct 11837 CTCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCT 11896 Query 12811 CTCTGATCGCGGCCTGCCGATATTCAAGTGGCTGCAAGAGGAATACGGCGTAACCGGCGA 12870 | |||| || ||| | ||||| ||| |||||||||| |||| |||||||| ||| ||| Sbjct 11897 CGCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGA 11956 Query 12871 GGCGCTCTCGAAGATGGTCAGCGAGGGCAAGGTCGACGCTGCGACATTCCAGAAGGTTGT 12930 ||||||| ||||||| |||||||||||||| | || || |||| ||||| | Sbjct 11957 CAAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCAT 12016 Query 12931 TGCCGAGCGCATCGGCGGTGCCGC 12954 | ||| ||||||||| || || Sbjct 12017 CGAGGAGAACATCGGCGGCGCGGC 12040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191087426695680