Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_014459.1
Length=59798
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 295 3e-75
seq63378 165 3e-36
>seq63210
Length=11074
Score = 295 bits (326), Expect = 3e-75
Identities = 530/769 (69%), Gaps = 41/769 (5%)
Strand=Plus/Plus
Query 54398 GTGGCGGGAGCAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGA 54457
||||||| | |||||||| ||||| || ||||| |||||||||||| | | ||||||
Sbjct 7135 GTGGCGGAACCAGCTCGGGACGCTCGGGTCGGGCAACCACTTCATCGAGGTCTCCCTCGA 7194
Query 54458 CCACCTCGACCGGGTGTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGAT 54517
| | | |||| ||| ||| |||||||||||||||| || || || ||||| ||||||||
Sbjct 7195 CGAGCAGGACCAGGTCTGGCTGTTCCTGCACTCCGGGTCACGCGGCGTCGGCAACAAGAT 7254
Query 54518 CGCGCAGAAGCACATTCAGGCCGCGCAG--GGCTATTGCCTCGCCAACGG-GCTGCA-CG 54573
||| ||| |||||| | |||| || ||| || | | ||| | || | ||
Sbjct 7255 CGCCCAGCGGCACATCACGATCGCGAAGAAGGCGATGG-------AGCGGTGGTGGATCG 7307
Query 54574 ---TGCCGCACAAGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACC 54630
||||| || || |||||||||||||||||||||||| |||||||||||| |||
Sbjct 7308 AGCTGCCGGACCCCGACCTGGCGTACCTCGTCGAGGGCACGCCCGAGTTCGACCGGTACA 7367
Query 54631 TCGTCGAACTGCGCTGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAAATGATGGACC 54690
||| ||| ||||| |||||||||| |||||| | |||||||| || ||||||||||
Sbjct 7368 TCGCCGAGCTGCGGTGGGCGCAGCACTTCGCGCTCCTCAACCGCGAGGAGATGATGGACC 7427
Query 54691 GATTCGA---GCAGGCGTTC-AGG-CATTGGGTCGGCGCCGACCAGNNNNNNNNNNNNNN 54745
| ||| |||| | | ||| ||| || || ||| | ||
Sbjct 7428 GGGTCGTCCGGCAGCTGCGCGAGGTCAT--GGACGCGCCCGTCGAGGAGCTCGAGCGA-- 7483
Query 54746 NNNNNNNACCATCAACGCGCACCACAACTACACGCAAAAGGAGCGGCAC-GGCGACCGTG 54804
|||||| |||||||||| |||||| ||| |||| || | ||
Sbjct 7484 ----------ATCAACTGCCACCACAACTTCACGCAGCGCGAGACGCACTGGGGGAAGTC 7533
Query 54805 ATGTGTGGCTGACCCGTAAGGGGGCGATCGACGCGAACGCCGGTGTGCGGGGCCTGATTC 54864
|||||| || |||| ||||| |||||| | ||||| || || | |||||||| |
Sbjct 7534 C-GTGTGGGTGTCCCGGAAGGGCGCGATCCAGGCGAAGGCGGGGCAGGCCGGCCTGATCC 7592
Query 54865 CGGGCTCGATGGGCACCTGTTCGTATGTCGTGACCGGCAAGGGTAATCCCGAGGCGTTGT 54924
| || |||||||||||| ||||| ||||| ||| || || | || ||| |
Sbjct 7593 CCGGGTCGATGGGCACCGCGTCGTACGTCGTCGAGGGCCTCGGCAA---CAAGCCGTCGC 7649
Query 54925 GC---TCGGCGCCGCACGGTGCGGGCCGCCGGTTCTCGCGCACGAAGGCGCGCAAGCTGT 54981
| ||| ||||||||||||| || || | || |||||| || ||| || | ||
Sbjct 7650 TCGAGTCGTCGCCGCACGGTGCCGGGCGGCTGTACTCGCGGTCGGCGGCACGGCGGACGT 7709
Query 54982 TCACGGTCGACGACCTCGAGGCGCGTATGGCGGGCATCGAGTACCGCAAGGGCGAGGCGT 55041
||||| |||||| ||| |||| |||| ||||||||||||||| | ||| ||||
Sbjct 7710 TCACGCACGACGAGCTCCGGGCGGCCATGGTCGGCATCGAGTACCGCGACACCGACGCGT 7769
Query 55042 GGGTCGACGAGATTCCCGACGCATACAAGCCGATCGACGTCGTGATGCACGACGCCGAAA 55101
|||||||||| || | || ||||||||||||||| |||||| |||||||
Sbjct 7770 TCCTCGACGAGATCCCGGCGGCGTACAAGCCGATCGACCAGGTGATGGCGGACGCCGCCG 7829
Query 55102 CGCTGGTGTCGGTGGATGCCGAGCTGCGGCAGCTCTTGAACGTCAAGGG 55150
|| |||||| | | |||||||||| || | ||||| |||||
Sbjct 7830 ACCTCGTGTCGATCCGGCACACGCTGCGGCAGATCGTCAACGTGAAGGG 7878
>seq63378
Length=15302
Score = 165 bits (182), Expect = 3e-36
Identities = 267/384 (70%), Gaps = 0/384 (0%)
Strand=Plus/Plus
Query 12571 GTCGATTATGGACAACGCCCTGGCGGCCGTCGACAAGACGGCGTTCGGGCTCGACGAGGC 12630
|||||| ||||||| ||||||| | ||||| | ||| || ||||| |||| ||| ||
Sbjct 11657 GTCGATCATGGACAGCGCCCTGCAGTCCGTCCGCGGGACCGCCTTCGGTCTCGGCGACGC 11716
Query 12631 TGCCACCACAGCGGCGTCCGCGGTGGCCGCCGGGCTTGAGCCGGGCGAGCAGCTCACTGG 12690
|| | || || ||| || |||||||| | |||| ||| || ||||||
Sbjct 11717 AGCTGGCGTTGCATCGAACGCCGTCGCCGCCGGTATCAAGCCCGGCCAGGCGCTCACGAA 11776
Query 12691 CTACTTGAAAACCGTCGCAGACACGGCCGCTATCGCCGGTACCTCAATGGCCGACATGGG 12750
||| | || | ||| ||| ||||| | ||||| ||| ||| | | ||| |||||
Sbjct 11777 GTACCTCAAGCTCACCGCCGACGCGGCCACCATCGCTGGTGTCTCGCTCGACGAGATGGG 11836
Query 12751 CGCAATCTTCAACAAGGTGCAGACGTCAGGCAAGGCGTTTACCGGCGATCTCAACATGCT 12810
| | ||| |||||||| | || ||||||| | || | | | |||||| |||
Sbjct 11837 CTCGATCATCAACAAGACGACCACCAGCGGCAAGGTCTACACGGACAACCTCAACCAGCT 11896
Query 12811 CTCTGATCGCGGCCTGCCGATATTCAAGTGGCTGCAAGAGGAATACGGCGTAACCGGCGA 12870
| |||| || ||| | ||||| ||| |||||||||| |||| |||||||| ||| |||
Sbjct 11897 CGCTGACCGGGGCATCCCGATCTTCCAGTGGCTGCAGAAGGAGTACGGCGTCTCCGCCGA 11956
Query 12871 GGCGCTCTCGAAGATGGTCAGCGAGGGCAAGGTCGACGCTGCGACATTCCAGAAGGTTGT 12930
||||||| ||||||| |||||||||||||| | || || |||| ||||| |
Sbjct 11957 CAAGCTCTCGTCGATGGTCTCGCAGGGCAAGGTCGACTCGGCCACCTTCCGCAAGGTCAT 12016
Query 12931 TGCCGAGCGCATCGGCGGTGCCGC 12954
| ||| ||||||||| || ||
Sbjct 12017 CGAGGAGAACATCGGCGGCGCGGC 12040
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 191087426695680
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