Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_014461.1 Length=73453 Score E Sequences producing significant alignments: (Bits) Value seq62752 172 3e-38 >seq62752 Length=6345 Score = 172 bits (190), Expect = 3e-38 Identities = 522/794 (66%), Gaps = 27/794 (3%) Strand=Plus/Minus Query 48090 CTTCGGGCTTCAGGCGTACATCCAGAAGCACCTGGTGGACGCGTGGAAGCCGTTTTTCGA 48149 |||||| || ||||||| ||||||| ||| || || |||||| |||||| |||| Sbjct 3002 CTTCGGCCTGCAGGCGTTCATCCAGCGCTCCCTCGTCGAGGCGTGGGCGCCGTTCTTCGC 2943 Query 48150 CGCCGACGAGGACTTGGTAGCGGAGCTGTACGAAGAG-CGCGTGACGGCGATCCTGGGGC 48208 ||||||||||||| ||| || | |||| ||| || ||| | ||| | | | || | Sbjct 2942 CGCCGACGAGGACGAGGTCGCCGGCCTGTTCGAGCAGGCGCTCCAGGGCTA-CTTCGGCC 2884 Query 48209 CGAACACGATTGGCTCTCGTCACATCCGCAAGCTGCACCGGCTGGGGTATCTGCCGCTGC 48268 ||||| || ||| | ||| ||||| |||||||| ||||| || |||||||| Sbjct 2883 CGAACCACATCGGCACCGACCACGTCCGCGCCCTGCACCGCCTGGGCTACCTGCCGCTCG 2824 Query 48269 GGTTCTGCGCGGTCCCTGAGGGCACGTTGGTGCCTATCGGGGTGCCTAGCTTCACTGTCG 48328 | || ||||| | || |||||||| | | || ||||| || | | | | || |||| Sbjct 2823 AGATCCGCGCGCTGCCCGAGGGCACCCTCGCTCCGATCGGCGTCGCCACCCTGACGGTCG 2764 Query 48329 AGAACACGCATCCG-GACTTTTACTGGCTGACCAACTACATCGAGACTGGCCTTAGCGCT 48387 ||||||| | || || || | ||||||| | |||||||||||||| | || || Sbjct 2763 AGAACAC-CGTCGACGAGTTCTTCTGGCTGCCGAACTACATCGAGACCGCACTGTCTGCG 2705 Query 48388 GGGGTGTGGCAGGCCAGCACGTCTGCGACCATCGCTAAGCAGTACCGGCGCGTGCTCGCC 48447 | | ||||| || ||| || || | || ||||| |||| ||| Sbjct 2704 TCGATCTGGCACCCCTCGACGGTCGCCACGAAGGCGCTCGAGTAC---CGCGACCTCATG 2648 Query 48448 GAGGCC---GCGGCCTTAACTGGTGGCGACAAGGCGTTTGTCGAC-TGGCAGTGCCATGA 48503 |||| | || ||| || |||| || ||| ||||| | || | ||| || Sbjct 2647 GAGGACTGGGCCGCCCGCACCGGTGCAGATCCCGCGAGCATCGACTTCGCCG-CCCACGA 2589 Query 48504 CTTCTCGTACCG-GGGCATGTCCAGCCACGAGACGGCGGCAGCTTCCGGCGCGGCGCACC 48562 |||||||| ||| ||||| ||| ||| |||| |||| || || ||| || | |||| Sbjct 2588 CTTCTCGTTCCGCGGGCA-GTCGAGCATCGAGTCGGCCGCGGCGGGCGGTGCCGGACACC 2530 Query 48563 TGCTTAGCTTCACTGGCACGGATTCGCTTGTGTCGCTTGACTGGATCGACCGTTACTACG 48622 |||| ||| ||||| || ||| | || || |||| |||||||| |||||| Sbjct 2529 TGCTCTCGTTCCTCGGCACCGACTCGATGCCCTCCCTCGACTTCATCGACCGCTACTACC 2470 Query 48623 GCGGCGAGTACATCGCCGGGTCG--------GTGCCCGCGACTGAGCATTCGGTGATGTG 48674 |||||| || || |||| | || |||||||| ||||| || ||||| Sbjct 2469 CCGGCGACAAC--GGCTGGGTGGCGGCGAGCGTCCCCGCGACCGAGCACAGCGTCATGTG 2412 Query 48675 TACCGGGATCGAGACGGTGGGGGAGCTTGAGACGTTCCGGCGTCTGCTCACCCTGTATCC 48734 || || | | || ||||| ||||| ||| || | ||| | |||| || Sbjct 2411 ---CGTCCGCGGCGCCGACGGCGAGCTGGAGACCTTCGCGCAGATCCTCGACGTGTACCC 2355 Query 48735 GGAAGGCATCGTAAGCATCGTTAGCGACACGTTCGACCTGTGGCGGGTGCTCACGGAGTA 48794 | |||||||| || |||||| |||||||||| ||| ||||| ||| Sbjct 2354 GACGGGCATCGTCTCGGCGGTGAGCGACGGCTTCGACCTGTTCAAGGTCCTCACCGAGAC 2295 Query 48795 CCTGCCGACGCTGGCGAAGCAGATCAAGTCGCGTGACGGCAAGCTGGTGATCCGGCCCGA 48854 || ||| ||| | | | |||| | || ||||||||||| || ||||| || || Sbjct 2294 GCTCCCGCAGCTCAAGGACCGCATCACCGCCCGCGACGGCAAGCTCGTCATCCGTCCGGA 2235 Query 48855 CTCGGGCGATCCGG 48868 ||||||||| |||| Sbjct 2234 CTCGGGCGACCCGG 2221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234742520673056