Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_014461.1
Length=73453
Score E
Sequences producing significant alignments: (Bits) Value
seq62752 172 3e-38
>seq62752
Length=6345
Score = 172 bits (190), Expect = 3e-38
Identities = 522/794 (66%), Gaps = 27/794 (3%)
Strand=Plus/Minus
Query 48090 CTTCGGGCTTCAGGCGTACATCCAGAAGCACCTGGTGGACGCGTGGAAGCCGTTTTTCGA 48149
|||||| || ||||||| ||||||| ||| || || |||||| |||||| ||||
Sbjct 3002 CTTCGGCCTGCAGGCGTTCATCCAGCGCTCCCTCGTCGAGGCGTGGGCGCCGTTCTTCGC 2943
Query 48150 CGCCGACGAGGACTTGGTAGCGGAGCTGTACGAAGAG-CGCGTGACGGCGATCCTGGGGC 48208
||||||||||||| ||| || | |||| ||| || ||| | ||| | | | || |
Sbjct 2942 CGCCGACGAGGACGAGGTCGCCGGCCTGTTCGAGCAGGCGCTCCAGGGCTA-CTTCGGCC 2884
Query 48209 CGAACACGATTGGCTCTCGTCACATCCGCAAGCTGCACCGGCTGGGGTATCTGCCGCTGC 48268
||||| || ||| | ||| ||||| |||||||| ||||| || ||||||||
Sbjct 2883 CGAACCACATCGGCACCGACCACGTCCGCGCCCTGCACCGCCTGGGCTACCTGCCGCTCG 2824
Query 48269 GGTTCTGCGCGGTCCCTGAGGGCACGTTGGTGCCTATCGGGGTGCCTAGCTTCACTGTCG 48328
| || ||||| | || |||||||| | | || ||||| || | | | | || ||||
Sbjct 2823 AGATCCGCGCGCTGCCCGAGGGCACCCTCGCTCCGATCGGCGTCGCCACCCTGACGGTCG 2764
Query 48329 AGAACACGCATCCG-GACTTTTACTGGCTGACCAACTACATCGAGACTGGCCTTAGCGCT 48387
||||||| | || || || | ||||||| | |||||||||||||| | || ||
Sbjct 2763 AGAACAC-CGTCGACGAGTTCTTCTGGCTGCCGAACTACATCGAGACCGCACTGTCTGCG 2705
Query 48388 GGGGTGTGGCAGGCCAGCACGTCTGCGACCATCGCTAAGCAGTACCGGCGCGTGCTCGCC 48447
| | ||||| || ||| || || | || ||||| |||| |||
Sbjct 2704 TCGATCTGGCACCCCTCGACGGTCGCCACGAAGGCGCTCGAGTAC---CGCGACCTCATG 2648
Query 48448 GAGGCC---GCGGCCTTAACTGGTGGCGACAAGGCGTTTGTCGAC-TGGCAGTGCCATGA 48503
|||| | || ||| || |||| || ||| ||||| | || | ||| ||
Sbjct 2647 GAGGACTGGGCCGCCCGCACCGGTGCAGATCCCGCGAGCATCGACTTCGCCG-CCCACGA 2589
Query 48504 CTTCTCGTACCG-GGGCATGTCCAGCCACGAGACGGCGGCAGCTTCCGGCGCGGCGCACC 48562
|||||||| ||| ||||| ||| ||| |||| |||| || || ||| || | ||||
Sbjct 2588 CTTCTCGTTCCGCGGGCA-GTCGAGCATCGAGTCGGCCGCGGCGGGCGGTGCCGGACACC 2530
Query 48563 TGCTTAGCTTCACTGGCACGGATTCGCTTGTGTCGCTTGACTGGATCGACCGTTACTACG 48622
|||| ||| ||||| || ||| | || || |||| |||||||| ||||||
Sbjct 2529 TGCTCTCGTTCCTCGGCACCGACTCGATGCCCTCCCTCGACTTCATCGACCGCTACTACC 2470
Query 48623 GCGGCGAGTACATCGCCGGGTCG--------GTGCCCGCGACTGAGCATTCGGTGATGTG 48674
|||||| || || |||| | || |||||||| ||||| || |||||
Sbjct 2469 CCGGCGACAAC--GGCTGGGTGGCGGCGAGCGTCCCCGCGACCGAGCACAGCGTCATGTG 2412
Query 48675 TACCGGGATCGAGACGGTGGGGGAGCTTGAGACGTTCCGGCGTCTGCTCACCCTGTATCC 48734
|| || | | || ||||| ||||| ||| || | ||| | |||| ||
Sbjct 2411 ---CGTCCGCGGCGCCGACGGCGAGCTGGAGACCTTCGCGCAGATCCTCGACGTGTACCC 2355
Query 48735 GGAAGGCATCGTAAGCATCGTTAGCGACACGTTCGACCTGTGGCGGGTGCTCACGGAGTA 48794
| |||||||| || |||||| |||||||||| ||| ||||| |||
Sbjct 2354 GACGGGCATCGTCTCGGCGGTGAGCGACGGCTTCGACCTGTTCAAGGTCCTCACCGAGAC 2295
Query 48795 CCTGCCGACGCTGGCGAAGCAGATCAAGTCGCGTGACGGCAAGCTGGTGATCCGGCCCGA 48854
|| ||| ||| | | | |||| | || ||||||||||| || ||||| || ||
Sbjct 2294 GCTCCCGCAGCTCAAGGACCGCATCACCGCCCGCGACGGCAAGCTCGTCATCCGTCCGGA 2235
Query 48855 CTCGGGCGATCCGG 48868
||||||||| ||||
Sbjct 2234 CTCGGGCGACCCGG 2221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 234742520673056
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |