Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq63299 136 5e-27 seq7277 116 5e-21 >seq63299 Length=13169 Score = 136 bits (150), Expect = 5e-27 Identities = 311/456 (68%), Gaps = 18/456 (4%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| || ||||| | || | || ||||| ||||| | ||||| ||||| || Sbjct 6939 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 6880 Query 15947 GATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || | ||||| || ||| || | ||||||||||| || ||||| || ||||| Sbjct 6879 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 6822 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 6821 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 6764 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTT-CGCGAGCGACTTCAAAG 16121 | |||||||| ||||||| || || ||||| || ||||| | | | ||| ||| Sbjct 6763 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAA- 6705 Query 16122 AGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 16181 ||||| || || || ||| || ||||||||||||||||| || || | || | | ||| Sbjct 6704 AGATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAGCCTGAA 6645 Query 16182 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 16240 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 6644 -ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCC 6586 Query 16241 CGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCG-CCACTTCCAAAGT 16299 ||||| || ||| | || || ||||| |||||| ||| ||||| | ||| Sbjct 6585 AGTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCGCCCACTGC---AGT 6529 Query 16300 --ATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 |||||||||||| ||| | ||| || || | ||| Sbjct 6528 AAATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 6493 >seq7277 Length=17119 Score = 116 bits (128), Expect = 5e-21 Identities = 199/281 (71%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||| ||||| |||||||| || |||| |||||||| | | Sbjct 15464 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCA--C 15407 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | || |||| | ||| ||||||| ||||||||||||||||| || || || | Sbjct 15406 CTCCAAGTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACTATAC 15347 Query 16093 ATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACA 16148 | || ||||| || || ||||| | ||||| || || || | || |||||| Sbjct 15346 AAGG--CGCTTTCGATTTCGCCTTCTCAAACAAATCCC-TA-ACTCTAGAAGCTCCCACA 15291 Query 16149 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 16208 || ||||||| ||| ||||| | || || | ||| || || || ||| || |||| Sbjct 15290 CCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGTACACCAGCTTCA 15231 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || | |||| || | ||| ||||| || |||||||| Sbjct 15230 CCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 15190 Score = 107 bits (118), Expect = 2e-18 Identities = 198/287 (69%), Gaps = 24/287 (8%) Strand=Plus/Minus Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||||||||| |||||||| || || | |||||||| | Sbjct 14153 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 14098 Query 16035 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACG 16088 ||||||| |||| | || ||||||| ||||||||||||||||| || || Sbjct 14097 --ACCACCAAGTCCTGCACCTCTCTGTCTTCCCACAGCATCAATCTCATCAATAAACACA 14040 Query 16089 ATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCG 16142 || || || || |||||| | ||||| | ||||| || || || | || Sbjct 14039 ATACAAGGCGCTTTAGATTTCGCCTTC----TCAAACAAATCCC-TA-ACTCTAGAAGCT 13986 Query 16143 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 16202 |||||||| ||||||| ||| ||||| | || || | ||| || || || ||| | Sbjct 13985 CCCACACCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCA 13926 Query 16203 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 | ||||| || | |||| || | ||| ||||| || |||||||| Sbjct 13925 GCCTCACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 13879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620248413198080