Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq63495 138 1e-27 >seq63495 Length=23585 Score = 138 bits (152), Expect = 1e-27 Identities = 341/507 (67%), Gaps = 14/507 (3%) Strand=Plus/Plus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| || ||||| || || |||||||| || || || || | || |||||| Sbjct 13725 ATCTGGCGGTCGAAGCGGCCGGGGCGGAGGAGCGCCGGGTCGAGCACGTCCGGACGGTTC 13784 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGC 11616 || ||||| |||| | | | |||| |||||| |||||||| || ||| ||| Sbjct 13785 GTCGCGGCGATGAGGATGACGTTCGTCTTGCCGTCGAAGCCGTCCATCTCGACGAGGAGC 13844 Query 11617 TGGTTGATCGTCTGTTCACGCTCATCGTTGGAGG-GC--ATACCACCTGCCGAACGCTTC 11673 ||||| | |||||| || ||||| |||||| | || || || | ||| ||| | Sbjct 13845 TGGTTCAGCGTCTGCTCGCGCTCGTCGTTGCCGCCGCCGATGCCGGC-GCC--ACGGTGA 13901 Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 ||| || ||||| ||||| |||||||| ||||| ||| ||| ||||| Sbjct 13902 CGACCCACGGCGTCGATCTCGTCGATGAAGACGATGGCCGGGGAGTTCTGCTTCGCCTGC 13961 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG-- 11791 ||||| || ||||| || || |||| || ||||| ||||||||||| ||||||| | Sbjct 13962 TCGAACAGGTCACGGACGCGGCTCGCGCCGACACCGACGAACATCTCGACGAAGTCCGAA 14021 Query 11792 CGGCAGAACACTGAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 | | ||| | || | ||| || ||| | ||||| |||| ||| ||||||||||| Sbjct 14022 CCGGAGATC---GAGTAGAACGGCACACCCGCTTCACCCGCGACGGCGCGAGCGAGGAGC 14078 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACT 11909 ||||| || || || || | || || || |||| ||||||||||| || || Sbjct 14079 GTCTTGCCGGTTCCGGGAGGGCCGTACAGCAGCACGCCCTTCGGGATCTTGGCGCCGACG 14138 Query 11910 TCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || | | | | |||| ||||||||| ||| ||||||| || ||||| | || Sbjct 14139 GCC-TGGAACTTCGCCGGCTCCTTGAGGAACTCCTTGATCTCCTGGAGCTCCTCGATCGC 14197 Query 11970 GGAGTCGATACCCTCAACATCGGTGAA 11996 |||| ||| | || |||| ||| Sbjct 14198 CTCGTCGGCACCGGCCACGTCGGAGAA 14224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588507292899200