Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq63299 132 6e-26 seq7277 116 4e-21 seq11918 95.1 1e-14 seq6171 89.7 6e-13 seq12363 86.0 7e-12 seq34693 84.2 3e-11 >seq63299 Length=13169 Score = 132 bits (146), Expect = 6e-26 Identities = 308/455 (68%), Gaps = 16/455 (4%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| || ||||| | || | || ||||| ||||| | ||||| || || || Sbjct 6939 ATCAAATCGTCCTGGCCTCAGCAAAGCAGAGTCAAGAATATCTGCACGATTGGTTGCCGC 6880 Query 9254 GATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 | || | ||||| || ||| || | ||||||||||| || ||||| |||||||| Sbjct 6879 AACAACTATTATACCAGTATTTCCTT--CGAAACCATCCATTTCAGTCAATAGTTGGTTC 6822 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | || ||||||| ||||||||| || | | | | |||| | | |||| || | Sbjct 6821 AGGGTCTGTTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTCCCTCTTTGCCGCCCAA 6764 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGA 9429 | |||||||| ||||||| || ||||| || || |||||| ||| | | || | Sbjct 6763 CAGCATCAATTTCATCAACAAATACAATGCAAGGAGCATTTTCCTTGGCCTTCTTGAAAA 6704 Query 9430 GATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAAC 9489 |||| || || | ||| || ||||||||||||||||| || || | || | | ||| Sbjct 6703 GATCACGGACTCGAGAGGCTCCAACACCAACAAACATCTCAACGAATTCTGAGCCTGAA- 6645 Query 9490 ATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9548 |||| || || || ||| | |||||| ||||| || || || | || || || Sbjct 6644 ATTGAGAAAAATGGAACACCCGCTTCACCAGCAATTGCCTTTGCTAGCAAGGTTTTCCCA 6585 Query 9549 GTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC-ACTTCCAAAGTA 9607 ||||| || ||| | || || |||| |||||| ||||| ||| | |||| Sbjct 6584 GTACCAGGAGGACCAACAAGAAGAACACCTTTTGGAATACGAGCGCCCACTGC---AGTA 6528 Query 9608 --TCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||||||||||| ||| | ||| || || | ||| Sbjct 6527 AATCTCTCAGGTTTCTTCAAAAATTCTACGACCTC 6493 >seq7277 Length=17119 Score = 116 bits (128), Expect = 4e-21 Identities = 196/281 (70%), Gaps = 12/281 (4%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || ||||| || || |||||||| || |||| |||||||| | | Sbjct 15464 AACCCATCCATTTCAGTCAAGAGCTGATTAATAGTCTGCTCCCTCTCATCATTTCCA--C 15407 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | || |||| | ||| ||||||| ||||||||||||||||| || || |||| Sbjct 15406 CTCCAAGTCCTGCACCTCTCTGCCTTCCCACAGCATCAATCTCATCAATAAACACTATAC 15347 Query 9400 ATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACA 9455 | || || |||| || | ||||| | ||| | ||| || || |||||| Sbjct 15346 AAGGCGCTTTCGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCCCACA 15291 Query 9456 CCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCA 9515 || ||||||| ||| ||||| | || || | ||| || || || ||| || |||| Sbjct 15290 CCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGTACACCAGCTTCA 15231 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || | |||| || | ||| ||||| || |||||||| Sbjct 15230 CCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 15190 Score = 113 bits (124), Expect = 5e-20 Identities = 196/285 (69%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || |||||||| || |||||||| || || | |||||||| | Sbjct 14153 AACCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTCTCATCATTTCC---- 14098 Query 9342 ATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACA 9395 ||||||| |||| | || ||||||| ||||||||||||||||| || ||| Sbjct 14097 --ACCACCAAGTCCTGCACCTCTCTGTCTTCCCACAGCATCAATCTCATCAATAAACACA 14040 Query 9396 ATACATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCC 9451 ||||| || || |||| || | ||||| | ||| | ||| || || || Sbjct 14039 ATACAAGGCGCTTTAGATTTC----GCCTTCTCAAACAAATCCCTAACTCTAGAAGCTCC 13984 Query 9452 CACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGA 9511 |||||| ||||||| ||| ||||| | || || | ||| || || || ||| || Sbjct 13983 CACACCCACAAACAACTCAACAAACTCTGATGCTGCACAAGAGAAAAATGGCACACCAGC 13924 Query 9512 TTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||| || | |||| || | ||| ||||| || |||||||| Sbjct 13923 CTCACCAGCTACTGCTCTAGCTAAAAGGGTCTTCCCAGTACCTGG 13879 >seq11918 Length=25867 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||| || || ||||| || | |||||||||||| || ||| | |||| Sbjct 15237 ACATATCTTGGTAGAGCAATTGAAGCAAGATTGCAAACAGCAGTTTCAGTTGGACTTGTG 15296 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 ||||| | ||| |||||||||||||| ||| ||| || || || | ||||| ||||| Sbjct 15297 TACTCAATAATCTCTGTACACAAGTTAGAAGACTTGATAGTGCCAAGATTCTGCTGGTTG 15356 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| | ||||| | ||||| Sbjct 15357 CTTTTTCTATTGCAAGAATCCT 15378 Score = 93.3 bits (102), Expect = 5e-14 Identities = 157/225 (70%), Gaps = 2/225 (1%) Strand=Plus/Plus Query 107168 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 107227 || || ||||| || |||||||| ||||| ||||| | ||| ||| ||||| | ||| Sbjct 16586 TGAGGCCTTGGAGTGCCAGCATTAAAGAGTGTTGGAGATGCATGAGTGAACCAGCGTTGA 16645 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 |||||| | ||||||| | |||||| ||||| || || |||||| || | | Sbjct 16646 GACATCAAATGATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGAT 16705 Query 107288 ACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGA-AGATA 107346 || | ||| | ||||| ||| || |||| | | | || | || | || | || || Sbjct 16706 ACTCTCATCAGCATGTGTTGTGGCCTTTCTACAATCTTTCCCT-GAATCTTTAAGAGGTA 16764 Query 107347 GCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTC 107391 | | ||||||||||||| |||||||||| || | ||| |||| Sbjct 16765 AGACCTTTCAAGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTC 16809 >seq6171 Length=36435 Score = 89.7 bits (98), Expect = 6e-13 Identities = 152/219 (69%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| | ||| || |||| ||||| | |||||||||||| || || Sbjct 4962 GCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCA 4903 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| | ||||| || ||||||||| | || | ||||| ||| |||||| || Sbjct 4902 GGCATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATC 4843 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG-CGAGACTTTGTGTCAAA 117452 || || ||||| ||||| || | | |||||| ||||| | || || | || || Sbjct 4842 CCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAACCATCGATCCAA 4783 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGG 117491 | | | ||||||||||||||||| |||| ||| || Sbjct 4782 CGA----AGGGCCCATTTCGCCTTCTTTTCAACACAAGG 4748 >seq12363 Length=97601 Score = 86.0 bits (94), Expect = 7e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||||| |||||| || ||||| || | |||||| ||||| || ||| | |||| Sbjct 64595 ACATATCGTGGAAGAGCAATTGAGGCAAGATTGCACACAGCAGTTTCAGTAGGACTTGTG 64536 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || || | |||||| ||||||||||| ||| ||| || || || | ||||| ||||| Sbjct 64535 TATTCAATAATTTCAGTACACAAGTTAGAAGACTTGATTGTGCCAAGATTCTGCTGGTTG 64476 Query 106568 CTCTTTTTGTTGCACGCATCCT 106589 || ||| |||| || | ||||| Sbjct 64475 CTTTTTCTGTTACAAGTATCCT 64454 >seq34693 Length=17230 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/276 (67%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || | ||| | || | |||||| || ||| | ||| || || || Sbjct 1959 ATCAAACCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 2018 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 ||||||| | || || | | | |||||||||||| || || | ||||||||| | Sbjct 2019 AATGACAATGACTCCAGTGTTACCAGTAAAACCATCCATTTCAGTAAGAAGTTGGTTCAG 2078 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9373 || || || | ||||||||| || | ||||| | | |||| | || || || Sbjct 2079 TGTCTGCTCTCTTTCATCATTTCCTCCTCCAATACCAGTTCCTCTTTGCCTCCCAACTGC 2138 Query 9374 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 9433 |||||| |||||||| || | || || || ||||| || | | || | || Sbjct 2139 ATCAATTTCATCAATAAAAATTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTC 2198 Query 9434 GCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469 | ||| || || |||||||||||||||||||| Sbjct 2199 CCTAACTCTAGAAGCTCCCACACCAACAAACATCTC 2234 Score = 84.2 bits (92), Expect = 3e-11 Identities = 184/276 (67%), Gaps = 0/276 (0%) Strand=Plus/Plus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | || || | ||| | || | |||||| || ||| | ||| || || || Sbjct 2427 ATCAAACCTTCCAGGTCTAAGCAAAGCTTGATCAAGAATTTCAGGCCTATTAGTAGCAGC 2486 Query 9254 GATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9313 ||||||| | || || | | | |||||||||||| || || | ||||||||| | Sbjct 2487 AATGACAATGACTCCAGTGTTACCAGTAAAACCATCCATTTCAGTAAGAAGTTGGTTCAG 2546 Query 9314 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGGC 9373 || || || | ||||||||| || | ||||| | | |||| | || || || Sbjct 2547 TGTCTGCTCTCTTTCATCATTTCCTCCACCAATACCAGTTCCTCTTTGCCTCCCAACTGC 2606 Query 9374 ATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATC 9433 |||||| |||||||| || | || || || ||||| || | | || | || Sbjct 2607 ATCAATTTCATCAATAAAAATTATGCAAGGCGAATTTTGTTTCGCCTTGTTGAATAAGTC 2666 Query 9434 GCGAACCCTTTTGGCGCCCACACCAACAAACATCTC 9469 | ||| || || |||||||||||||||||||| Sbjct 2667 CCTAACTCTAGAAGCTCCCACACCAACAAACATCTC 2702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589511293279360