Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq43689 131 1e-25 seq16715 102 5e-17 seq6200 102 5e-17 seq24164 100 2e-16 seq32996 98.7 6e-16 seq6347 96.9 2e-15 >seq43689 Length=21515 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 |||||||||||| ||||| |||||||||| ||| || ||||||||||| ||||||| Sbjct 2434 TTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCG 2375 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 |||| | || |||| || |||||||| || || || || | | ||||||||| | | Sbjct 2374 CAAGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGG 2315 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | ||||||||||| ||||| ||||| | || | || | ||||| Sbjct 2314 GAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAA 2255 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 | || | ||||||||| || || || || ||||| ||||| ||||||||| Sbjct 2254 CCTCAAGGGTTATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCATA 2205 Score = 93.3 bits (102), Expect = 3e-14 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| || || ||||| | |||| | ||| |||| || ||||| || || ||||| Sbjct 2624 TCCTTCTGGATATTGTAGTCAGCAAGGGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAG 2565 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||||||| | || | |||||| ||||| |||||| ||| || || Sbjct 2564 ATCAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCCTGAATCTTAGCTTTCAC--AT 2507 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| ||| ||| || || | ||| ||||| || || || | ||||| Sbjct 2506 --TGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATGGTCTTACCGGTTAAGGTCTT 2449 Query 34967 CACAAAGATCTGCAT 34981 ||||||||||||||| Sbjct 2448 CACAAAGATCTGCAT 2434 >seq16715 Length=90750 Score = 102 bits (112), Expect = 5e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| || || | |||| | ||| | || || Sbjct 66027 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGTCCGTCCTCA 66086 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || | || |||||||||| | || | || |||||||| Sbjct 66087 AGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 66146 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| ||| ||| | || | || | ||||| || | ||| ||||| ||| Sbjct 66147 ATCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 66206 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || ||||||||||| || || ||||| Sbjct 66207 CCGGTCAGAGTCTTCACGAAAATTTGCAT 66235 >seq6200 Length=22545 Score = 102 bits (112), Expect = 5e-17 Identities = 144/200 (72%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| | ||| | || |||| || ||||| |||||||| || Sbjct 22104 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAA 22163 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | || ||||||||| | || | ||| |||||||| ||||| |||||| || Sbjct 22164 ATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGAC--AT 22221 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| || | |||||| || | ||| || || || ||||| || || || Sbjct 22222 --TATCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 22279 Query 34967 CACAAAGATCTGCATATTCG 34986 ||| ||||||||||| |||| Sbjct 22280 CACGAAGATCTGCATCTTCG 22299 >seq24164 Length=196930 Score = 100 bits (110), Expect = 2e-16 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851 ||||||||||||| || || | || | ||| |||| || ||||| |||||||| || | Sbjct 29744 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 29685 Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 | | ||| |||||||| | || | || |||||||| |||||| |||||| Sbjct 29684 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 29625 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || | | ||||| |||| || || || || ||||| ||||| ||||| | Sbjct 29624 CAATAGTGTCGCTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 29565 Query 34972 AGATCTGCATATT 34984 |||||||||| || Sbjct 29564 AGATCTGCATTTT 29552 >seq32996 Length=3898 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || || | ||| |||| |||| || |||||||| || ||||| Sbjct 2038 TCTTTCTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAG 2097 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | ||||| ||| | || | || |||||||| |||||| |||||| || Sbjct 2098 ATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGAC--AT 2155 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 |||| || ||| ||| || || | || ||||| ||||| ||||| ||||| Sbjct 2156 --TATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTT 2213 Query 34967 CACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 2214 AACAAAGATCTGCAT 2228 Score = 84.2 bits (92), Expect = 1e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| || || ||||| | |||| | || |||| || ||||| || || ||||| Sbjct 300 TCTTTCTGGATATTGTAGTCTGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAG 359 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | || || ||| | || | ||| |||||||| ||||| ||| || Sbjct 360 ATAAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTG 419 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | || || || || || || |||||||||||| Sbjct 420 TCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACA 479 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 480 AAGATCTGCAT 490 >seq6347 Length=16439 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| || ||||||||||||||||||||| | |||| | || |||| || Sbjct 12350 AACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGCAAGGGTGCGACCATCCTC 12409 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || | | ||||||||| | || | |||||||| || Sbjct 12410 CAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTATCCTG 12469 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||||| || || || |||| || || | ||| || || | ||| || | Sbjct 12470 AATCTTCGCCTTCAC--AT--TATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATCG 12525 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| || | ||||| ||||| |||||||| Sbjct 12526 TCTTTCCAGTCAATGTCTTGACAAATATCTGCAT 12559 Score = 89.7 bits (98), Expect = 3e-13 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||||||||| | ||| ||| |||| |||| || ||||| ||||| Sbjct 13737 TCCTTCTGGATGTTATAGTCTGCAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCAAAG 13796 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||| || | || | || |||||||| |||||| || || || Sbjct 13797 ATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTGCCTTAAC--AT 13854 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| |||||| |||| |||||||| || || || || ||||| Sbjct 13855 --TATCGATTGTGTCAGAACTCTCAACCTCGAGAGTTATGGTCTTGCCAGTAAGGGTCTT 13912 Query 34967 CACAAAGATCTGCAT 34981 |||||||| ||||| Sbjct 13913 AACAAAGATTTGCAT 13927 Score = 86.0 bits (94), Expect = 4e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||||| || ||||||||||||||||||||| | |||| | || |||| || Sbjct 11922 AACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGCAAGGGTGCGACCATCCTC 11981 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || || ||||| || | | ||||||||| | || | |||||||| || Sbjct 11982 CAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTG 12041 Query 34892 AATCTTC 34898 ||||||| Sbjct 12042 AATCTTC 12048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324381715166592