Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq43689 131 1e-25
seq16715 102 5e-17
seq6200 102 5e-17
seq24164 100 2e-16
seq32996 98.7 6e-16
seq6347 96.9 2e-15
>seq43689
Length=21515
Score = 131 bits (144), Expect = 1e-25
Identities = 167/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812
|||||||||||| ||||| |||||||||| ||| || ||||||||||| |||||||
Sbjct 2434 TTCCTCCCCTCAGCCTCAGCACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAGTCCG 2375
Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872
|||| | || |||| || |||||||| || || || || | | ||||||||| | |
Sbjct 2374 CAAGGGTGCGGCCATCCTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGGG 2315
Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932
| | ||||||||||| ||||| ||||| | || | || | |||||
Sbjct 2314 GAATACCCTCCTTGTCTTGGATCTTGGCCTTGACATTGTCAATGGTGTCGGAGCTCTCAA 2255
Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
| || | ||||||||| || || || || ||||| ||||| |||||||||
Sbjct 2254 CCTCAAGGGTTATGGTCTTCCCGGTAAGGGTCTTAACAAAAATCTGCATA 2205
Score = 93.3 bits (102), Expect = 3e-14
Identities = 139/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| || || ||||| | |||| | ||| |||| || ||||| || || |||||
Sbjct 2624 TCCTTCTGGATATTGTAGTCAGCAAGGGTGCGTCCATCTTCAAGCTGCTTACCAGCAAAG 2565
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | ||||||||| | || | |||||| ||||| |||||| ||| || ||
Sbjct 2564 ATCAGCCTCTGCTGGTCTGGTGGGATCCCCTCTTTGTCCTGAATCTTAGCTTTCAC--AT 2507
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
| ||||| ||| ||| || || | ||| ||||| || || || | |||||
Sbjct 2506 --TGTCGATGGTGTCAGAACTCTCCACCTCCAAGGTGATGGTCTTACCGGTTAAGGTCTT 2449
Query 34967 CACAAAGATCTGCAT 34981
|||||||||||||||
Sbjct 2448 CACAAAGATCTGCAT 2434
>seq16715
Length=90750
Score = 102 bits (112), Expect = 5e-17
Identities = 148/209 (71%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||||||||| || || ||||| ||||| || || | |||| | ||| | || ||
Sbjct 66027 ACCAAGTGAAGGGTTGACTCCTTCTGGATGTTGTAATCAGCAAGGGTCCGTCCGTCCTCA 66086
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| ||||||||||| || | || |||||||||| | || | || ||||||||
Sbjct 66087 AGCTGCTTTCCGGCAAAGATCAATCTTTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGG 66146
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| ||| ||| | || | || | ||||| || | ||| ||||| |||
Sbjct 66147 ATCTTGGCTTTAACGTTGTCAATAGTGTCGGAGCTTTCAACCTCAAGGGTGATGGTCTTT 66206
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
|| || ||||||||||| || || |||||
Sbjct 66207 CCGGTCAGAGTCTTCACGAAAATTTGCAT 66235
>seq6200
Length=22545
Score = 102 bits (112), Expect = 5e-17
Identities = 144/200 (72%), Gaps = 8/200 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| | ||| | || |||| || ||||| |||||||| ||
Sbjct 22104 TCCTTCTGGATGTTGTAGTCGGCAAGAGTACGACCATCCTCAAGCTGCTTTCCGGCGAAA 22163
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| | || ||||||||| | || | ||| |||||||| ||||| |||||| ||
Sbjct 22164 ATCAAACGCTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGAC--AT 22221
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
||||||| || | |||||| || | ||| || || || ||||| || || ||
Sbjct 22222 --TATCGATGGTGTCGGAAGACTCAACCTCTAGGGTGATCGTCTTCCCCGTTAGGGTTTT 22279
Query 34967 CACAAAGATCTGCATATTCG 34986
||| ||||||||||| ||||
Sbjct 22280 CACGAAGATCTGCATCTTCG 22299
>seq24164
Length=196930
Score = 100 bits (110), Expect = 2e-16
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 34792 CTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATA 34851
||||||||||||| || || | || | ||| |||| || ||||| |||||||| || |
Sbjct 29744 CTTTCTGAATGTTGTAATCAGCTAGAGTACGTCCATCTTCGAGCTGCTTTCCGGCGAAGA 29685
Query 34852 TTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911
| | ||| |||||||| | || | || |||||||| |||||| ||||||
Sbjct 29684 TCAATCGCTGCTGGTCCGGTGGAATACCTTCCTTGTCTTGAATCTTAGCTTTGACATTGT 29625
Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971
| || | || | | ||||| |||| || || || || ||||| ||||| ||||| |
Sbjct 29624 CAATAGTGTCGCTCGATTCAACTTCGAGCGTGATCGTCTTCCCCGTAAGAGTTTTCACGA 29565
Query 34972 AGATCTGCATATT 34984
|||||||||| ||
Sbjct 29564 AGATCTGCATTTT 29552
>seq32996
Length=3898
Score = 98.7 bits (108), Expect = 6e-16
Identities = 140/195 (72%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| ||||| || || | ||| |||| |||| || |||||||| || |||||
Sbjct 2038 TCTTTCTGGATGTTGTAATCAGCAAGTGTTCGGCCATCTTCAAGCTGTTTCCCAGCAAAG 2097
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | ||||| ||| | || | || |||||||| |||||| |||||| ||
Sbjct 2098 ATCAGCCTCTGCTGATCTGGAGGAATGCCTTCCTTGTCTTGAATCTTAGCTTTGAC--AT 2155
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
|||| || ||| ||| || || | || ||||| ||||| ||||| |||||
Sbjct 2156 --TATCAATGGTGTCAGAACTCTCGACCTCAAGAGTGATGGTCTTTCCGGTGAGTGTCTT 2213
Query 34967 CACAAAGATCTGCAT 34981
||||||||||||||
Sbjct 2214 AACAAAGATCTGCAT 2228
Score = 84.2 bits (92), Expect = 1e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|||||||| || || ||||| | |||| | || |||| || ||||| || || |||||
Sbjct 300 TCTTTCTGGATATTGTAGTCTGCAAGGGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAG 359
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | || || ||| | || | ||| |||||||| ||||| ||| ||
Sbjct 360 ATAAGCCTCTGTTGATCTGGTGGGATCCCTTCCTTGTCCTGTATCTTTGCTTTCACATTG 419
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| | ||| || || | || || || || || || ||||||||||||
Sbjct 420 TCAATAGTATCAGAGCTCTCCACCTCCAATGTGATTGTCTTCCCAGTCAGAGTCTTCACA 479
Query 34971 AAGATCTGCAT 34981
|||||||||||
Sbjct 480 AAGATCTGCAT 490
>seq6347
Length=16439
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| | ||||| || ||||||||||||||||||||| | |||| | || |||| ||
Sbjct 12350 AACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGCAAGGGTGCGACCATCCTC 12409
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||| || || ||||| || | | ||||||||| | || | |||||||| ||
Sbjct 12410 CAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATACCCTCCTTATCCTG 12469
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947
||||||| || || || |||| || || | ||| || || | ||| || |
Sbjct 12470 AATCTTCGCCTTCAC--AT--TATCAATGGTATCTGAGCTCTCCACCTCCAAGGTAATCG 12525
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| ||||| || | ||||| ||||| ||||||||
Sbjct 12526 TCTTTCCAGTCAATGTCTTGACAAATATCTGCAT 12559
Score = 89.7 bits (98), Expect = 3e-13
Identities = 138/195 (71%), Gaps = 8/195 (4%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||||||||| | ||| ||| |||| |||| || ||||| |||||
Sbjct 13737 TCCTTCTGGATGTTATAGTCTGCAAGAGTTCTACCATCCTCCAATTGCTTTCCAGCAAAG 13796
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || | |||||| || | || | || |||||||| |||||| || || ||
Sbjct 13797 ATCAGCCTTTGCTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTGCCTTAAC--AT 13854
Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966
||||||| ||| |||||| |||| |||||||| || || || || |||||
Sbjct 13855 --TATCGATTGTGTCAGAACTCTCAACCTCGAGAGTTATGGTCTTGCCAGTAAGGGTCTT 13912
Query 34967 CACAAAGATCTGCAT 34981
|||||||| |||||
Sbjct 13913 AACAAAGATTTGCAT 13927
Score = 86.0 bits (94), Expect = 4e-12
Identities = 95/127 (75%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||| | ||||| || ||||||||||||||||||||| | |||| | || |||| ||
Sbjct 11922 AACAAGGTGAAGAGTTGATTCTTTCTGAATGTTATAGTCAGCAAGGGTGCGACCATCCTC 11981
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||| || || ||||| || | | ||||||||| | || | |||||||| ||
Sbjct 11982 CAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCCTG 12041
Query 34892 AATCTTC 34898
|||||||
Sbjct 12042 AATCTTC 12048
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324381715166592
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