Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_015720.1 Length=45530 Score E Sequences producing significant alignments: (Bits) Value seq63378 147 6e-31 >seq63378 Length=15302 Score = 147 bits (162), Expect = 6e-31 Identities = 468/713 (66%), Gaps = 46/713 (6%) Strand=Plus/Plus Query 1010 CGGCCTCGAGGTTGGGGCAAGTCCCCCATCCTAGGAATGATTGCCTTGGGTGAGGCCTTG 1069 || || ||||| |||||||||||||| |||| | || | | | || || || | Sbjct 2819 CGACCCCGAGGCTGGGGCAAGTCCCCGTTCCTCGCCGCGACCGGCATCGGCGAAGCGCTC 2878 Query 1070 GGTCCAG-TGGTCTTTGACGGATGGGACGCGGACGGACAACCCGTCGGGCGTCCTTGGTC 1128 || || | ||| ||||| |||||||| ||||| || ||||||| || || ||| Sbjct 2879 T-TCGAGGTCGTCCCCGACGGCTGGGACGCCGACGGGCAGCCCGTCGCCCGCCCGTGGAT 2937 Query 1129 AGAGACCAGGACTCCTATCGTCAATATCTCGG---CTGTG---TCTGAGGAGCAGGTCGA 1182 || || ||| ||| |||| || ||| | | | || || || ||||| | Sbjct 2938 CGACTTCAAGACG---ATCATCAACGTCCCGGTCACCGCGACCTCCGATGACCAGGTGCA 2994 Query 1183 TAACACGTGGTCGCCCATGCTCGAGATGCTGCACGAGGACGCAGCGATCCACGACCACTA 1242 ||||||||| | || |||||||||||| || | ||||| || |||| | | Sbjct 2995 GAACACGTGGGCACCGATGCTCGAGATGGCGCGCACCGACGCGCTTGTCAACGAGTTCGA 3054 Query 1243 CCCGGGCCTCGAGCCGATGGAAACTTTCATCTCTCTCCCGCGCGGTCGAGGTCGAATCGA 1302 | |||| |||||||| || |||||| | |||| |||| | || |||| || Sbjct 3055 CG------TCGACCCGATGGACACGTTCATCGCGATCCCCGGCGG-CAAGATCGAGCCG- 3106 Query 1303 CAAGCTCACCGCGTCGCCACGCACCGTCAAGGGCAAGCGCGCT---GTCTTCACGGTCAT 1359 | |||| |||| || || |||||||| | || ||| | || |||| Sbjct 3107 ----CGCACCTCGTCCGGCCGGTCCATCAAGGGCCTCCCCGGGCAGGTCGCCGCGATCAT 3162 Query 1360 GGACCAGACGGAGGAGTGGGTCGAGAGCAACGGCGGCAAGAAGCTCGCTCGAGTGC-TGC 1418 ||||||||| |||||||||||| || |||||||||| || || | || | | | Sbjct 3163 GGACCAGACCGAGGAGTGGGTCAAGGGCAACGGCGGTCTCCGCCTGGCGC-AGAACATCC 3221 Query 1419 GGTCGAACGCCGCGAAGGTCGGCGGCACGGTGCTCGAGTCGCCTAACGCGTTCATCCCCG 1478 | ||| | |||||| ||||| | ||||||| || |||||||||| ||| | Sbjct 3222 GCAACAACTCGACGAAGGCGTCCGGCATCACGATCGAGTCCCCGAACGCGTTCACCCCTG 3281 Query 1479 GTGAGAACTCGGTTGCAGAGGGCTCAGCCGCCTTCTGGGAC--GAT---ATTCGCG---- 1529 | ||||||||||| || |||| || || | |||||| ||| || | | Sbjct 3282 GCGAGAACTCGGTCGCCGAGGCATCCGCGCGCGACTGGGAGCTGATCGAATCTGGGAAAT 3341 Query 1530 --CCGG---TCGCGTTCGTGATACGTC-GCTGCTGTACGACACGCGAGAAGCGCCGCCAG 1583 || | ||||| || || | | | || |||||| || ||||||||| | | Sbjct 3342 ACCCAGACCTCGCGGCCGCC---CGCCAGATCCTCTACGACCACCGCGAAGCGCCGGCCG 3398 Query 1584 AGACGGATATGATCGAGCGCGACTCACTGCTCGCTGGGCTCCGTGTGGCGTACGGCGACA 1643 | || || ||| ||||| || ||| |||| || ||||| ||||||||||||| Sbjct 3399 ACACCGACCCCGCCGACCGCGAGTCCCTGATCGCCGGCCTCCGGTACGCGTACGGCGACA 3458 Query 1644 GCTCCGGCCATCCCGATGGCTGCGTGATCCATGACCCGCCATGTGAGCCGGGC 1696 |||| | ||| ||||| |||||||| ||||| | ||||| || ||||| ||| Sbjct 3459 GCTCGGACCACCCCGACGGCTGCGTCATCCACCAGCCGCCGTGCGAGCCCGGC 3511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 145464344297856