Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_015720.1
Length=45530
Score E
Sequences producing significant alignments: (Bits) Value
seq63378 147 6e-31
>seq63378
Length=15302
Score = 147 bits (162), Expect = 6e-31
Identities = 468/713 (66%), Gaps = 46/713 (6%)
Strand=Plus/Plus
Query 1010 CGGCCTCGAGGTTGGGGCAAGTCCCCCATCCTAGGAATGATTGCCTTGGGTGAGGCCTTG 1069
|| || ||||| |||||||||||||| |||| | || | | | || || || |
Sbjct 2819 CGACCCCGAGGCTGGGGCAAGTCCCCGTTCCTCGCCGCGACCGGCATCGGCGAAGCGCTC 2878
Query 1070 GGTCCAG-TGGTCTTTGACGGATGGGACGCGGACGGACAACCCGTCGGGCGTCCTTGGTC 1128
|| || | ||| ||||| |||||||| ||||| || ||||||| || || |||
Sbjct 2879 T-TCGAGGTCGTCCCCGACGGCTGGGACGCCGACGGGCAGCCCGTCGCCCGCCCGTGGAT 2937
Query 1129 AGAGACCAGGACTCCTATCGTCAATATCTCGG---CTGTG---TCTGAGGAGCAGGTCGA 1182
|| || ||| ||| |||| || ||| | | | || || || ||||| |
Sbjct 2938 CGACTTCAAGACG---ATCATCAACGTCCCGGTCACCGCGACCTCCGATGACCAGGTGCA 2994
Query 1183 TAACACGTGGTCGCCCATGCTCGAGATGCTGCACGAGGACGCAGCGATCCACGACCACTA 1242
||||||||| | || |||||||||||| || | ||||| || |||| | |
Sbjct 2995 GAACACGTGGGCACCGATGCTCGAGATGGCGCGCACCGACGCGCTTGTCAACGAGTTCGA 3054
Query 1243 CCCGGGCCTCGAGCCGATGGAAACTTTCATCTCTCTCCCGCGCGGTCGAGGTCGAATCGA 1302
| |||| |||||||| || |||||| | |||| |||| | || |||| ||
Sbjct 3055 CG------TCGACCCGATGGACACGTTCATCGCGATCCCCGGCGG-CAAGATCGAGCCG- 3106
Query 1303 CAAGCTCACCGCGTCGCCACGCACCGTCAAGGGCAAGCGCGCT---GTCTTCACGGTCAT 1359
| |||| |||| || || |||||||| | || ||| | || ||||
Sbjct 3107 ----CGCACCTCGTCCGGCCGGTCCATCAAGGGCCTCCCCGGGCAGGTCGCCGCGATCAT 3162
Query 1360 GGACCAGACGGAGGAGTGGGTCGAGAGCAACGGCGGCAAGAAGCTCGCTCGAGTGC-TGC 1418
||||||||| |||||||||||| || |||||||||| || || | || | | |
Sbjct 3163 GGACCAGACCGAGGAGTGGGTCAAGGGCAACGGCGGTCTCCGCCTGGCGC-AGAACATCC 3221
Query 1419 GGTCGAACGCCGCGAAGGTCGGCGGCACGGTGCTCGAGTCGCCTAACGCGTTCATCCCCG 1478
| ||| | |||||| ||||| | ||||||| || |||||||||| ||| |
Sbjct 3222 GCAACAACTCGACGAAGGCGTCCGGCATCACGATCGAGTCCCCGAACGCGTTCACCCCTG 3281
Query 1479 GTGAGAACTCGGTTGCAGAGGGCTCAGCCGCCTTCTGGGAC--GAT---ATTCGCG---- 1529
| ||||||||||| || |||| || || | |||||| ||| || | |
Sbjct 3282 GCGAGAACTCGGTCGCCGAGGCATCCGCGCGCGACTGGGAGCTGATCGAATCTGGGAAAT 3341
Query 1530 --CCGG---TCGCGTTCGTGATACGTC-GCTGCTGTACGACACGCGAGAAGCGCCGCCAG 1583
|| | ||||| || || | | | || |||||| || ||||||||| | |
Sbjct 3342 ACCCAGACCTCGCGGCCGCC---CGCCAGATCCTCTACGACCACCGCGAAGCGCCGGCCG 3398
Query 1584 AGACGGATATGATCGAGCGCGACTCACTGCTCGCTGGGCTCCGTGTGGCGTACGGCGACA 1643
| || || ||| ||||| || ||| |||| || ||||| |||||||||||||
Sbjct 3399 ACACCGACCCCGCCGACCGCGAGTCCCTGATCGCCGGCCTCCGGTACGCGTACGGCGACA 3458
Query 1644 GCTCCGGCCATCCCGATGGCTGCGTGATCCATGACCCGCCATGTGAGCCGGGC 1696
|||| | ||| ||||| |||||||| ||||| | ||||| || ||||| |||
Sbjct 3459 GCTCGGACCACCCCGACGGCTGCGTCATCCACCAGCCGCCGTGCGAGCCCGGC 3511
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 145464344297856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |