Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq6171 158 1e-33 seq11918 107 2e-18 >seq6171 Length=36435 Score = 158 bits (174), Expect = 1e-33 Identities = 565/874 (65%), Gaps = 11/874 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 || ||||| || ||||||| || |||||||||||||| || || | || | || || Sbjct 5256 TTCTGATACTCCCCAACTCTCTTCTCAAAGAAATTAGTCTTCCCTTGTAG-GCTAATCAG 5198 Query 18730 -TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||||||||| | |||| || || || | | || || | | Sbjct 5197 CTCCATCCAATCAAATGGATTCTGAGCATTGTACATCTTGTCATAACCCAAAGCATCCAA 5138 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | |||||| || ||||||| || ||| | |||||| ||| | |||||| || | | Sbjct 5137 CAATCTATCAGCGACAAATTCTATGTATTTACTCATCAAATCTCCATTCATCCCCACCAG 5078 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || ||||| | || || |||||| | || || |||| ||||| Sbjct 5077 AGCACAAGGAAGAGCATCACACACGAACTCCCTTTCTATCTCCACAGCATCTGCAATAAT 5018 Query 18909 AGATACAACTCTATCTTCA-TTAGGAGGGTA--TAGAAGATGTTTAAACATCAAACATGC 18965 |||| || ||| |||| || ||| | | | |||| |||||| || Sbjct 5017 TCCCCTGACTCGCTCCTCAGTTAGCTTCGTCCTTAGCAAAC-TGTAAAG--CAAACACGC 4961 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 ||||||||| || | || |||||||| || || ||||| || || ||||| ||||| Sbjct 4960 AAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTTAATCCAGG 4901 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| | || | |||||| ||||| ||||| ||| || ||| ||||| || || Sbjct 4900 CATTAACCCCCGTTTTTTCAACCAAAATATCGAACAGAAGCTTCCGCTGAAGAAAATCCC 4841 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCA 19145 ||| || |||||||| || | | |||| | || || | || ||||| Sbjct 4840 TTCAACACAAGCAAAAGCCACCAAGC--GCTCCGCGA-AAGTTTCGGAACCATCGATCCA 4784 Query 19146 TTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAG 19205 || ||||| | |||||||||| ||||| || || ||||| || | | || | Sbjct 4783 ACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGATTGCACGGAACAA 4724 Query 19206 ATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGA 19265 | | || || | ||| || | || | || | || ||||||||||| || || Sbjct 4723 TTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACTGTACATCTCGGA 4664 Query 19266 ATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTAC 19325 ||| ||||| || || || || || || || || ||| | || || | | ||| || Sbjct 4663 ATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTCAGCAACCTGGAC 4604 Query 19326 TTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAA 19385 || | || ||| | | | || || ||| || || || || |||||||| Sbjct 4603 GTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGAGGCGGCAAAAAA 4544 Query 19386 TGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAATCATTAAT 19445 || | ||||| | || |||||| ||||| | || |||| | | ||| | | | | Sbjct 4543 GGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTCCCAGTGACGATT 4484 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||| ||||| ||| |||||||| || ||||| ||||| ||| ||||| || ||||| Sbjct 4483 ATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGCTTTCTTGTACAT 4424 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATA 19539 | ||| || | |||| || || || || ||| Sbjct 4423 TTCCCAAATCTGTGGATACTGAATTGGGAACATA 4390 >seq11918 Length=25867 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 ||| |||||||| | |||||||||||||| ||| | || | | ||| || ||||| || Sbjct 16173 ACCCCCTTGATCAACATATCTGGCAGTATCATTAAACACACGCAGCATAGGAACAATCCC 16232 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||||||| | || || ||||| ||||||||| ||| |||| | ||| || | || Sbjct 16233 ATTTGATGTTCCGTTTGTTCCACGAATATAACTCCCAGTAGCACGTATGTTGTGCACAGA 16292 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | || || || || || ||| || | |||||| ||||| |||||||| || Sbjct 16293 TACGCCAATTCCCCCAGCTGATTTGCTAATAACAGCACATTCCTTAAGAGTATCATATAT 16352 Query 48539 TCCTTCTATACTATCATCTATCAT 48562 || || |||||||||||| |||| Sbjct 16353 GCCCTCAATACTATCATCTTTCAT 16376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 ||| || | |||||| | |||||||||||||||| | ||||| | || | ||| | Sbjct 16597 AGTGCCAGCATTAAAGAGTGTTGGAGATGCATGAGTGAACCAGCGTTGAGACATCAAATG 16656 Query 48659 ATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAA 48718 |||||| | || ||||| || |||||| || || || || | |||||| | ||| | Sbjct 16657 ATATGTCTTGATGACAGATTCAATATCCTCTTTGTGGATTCCAACAGATACTCTCATCAG 16716 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | ||| || ||||| ||||| || | || || || || || || |||| | Sbjct 16717 CATGTGTTGTGGCCTTTCTACAATCTTTCCCTGAATCTTTAAGAGGTAAGACCTTTCAAG 16776 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| |||||||| || Sbjct 16777 GGTTTTGAAACCAAAGTA 16794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561661473816960