Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq63531 196 2e-45 seq62913 84.2 7e-12 >seq63531 Length=42858 Score = 196 bits (216), Expect = 2e-45 Identities = 241/324 (74%), Gaps = 4/324 (1%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| |||||||| |||||||| ||||||||| | |||||||| || |||| Sbjct 32025 ACGGCAAGCTCTCGTGCCAGCTGTACCAGCGGAGCGCGGACATGTTCCTCGGTGTCCCGT 31966 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| ||||||||||||||||| | |||||| ||| ||| || ||| Sbjct 31965 TCAACATCGCCTCGTACGCGCTGCTGACCCACATGATCGCGGCGCAGACCGGGCTCGAGG 31906 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 ||||||| ||| | |||||||| |||||| |||| | || |||||||||||||||| Sbjct 31905 TCGGCGACTTCGTGTGGACCGGTGGCGACTGCCACGTCTACGACAACCACGTCGAGCAGG 31846 Query 25000 -CGACCGAACAACTGTCGCGCACG-CACACGGGCTATCCGTGGCTGGCGCTGAATCACCG 25057 ||| || || ||| |||||||| | ||| ||| ||| ||| | ||| | ||| Sbjct 31845 TCGA-GGAGCAGCTGACGCGCACGCCGTACGCGCT-CCCGACGCTCGAGCTCGCACCCCG 31788 Query 25058 CGACTCGATCTTCGAGTACACCGCCGACGACGTCATATTCCTCGGCTACCGGCCGCACCC 25117 |||||||||| ||| ||| ||| ||| ||| || ||||||||| | ||||| Sbjct 31787 CGACTCGATCGACGACTACGAGTACGAGGACTTCACCGTCGTCGGCTACCACCACCACCC 31728 Query 25118 GGTCATCAAGGCCCCCGTGGCCGT 25141 || ||||||||| | || ||||| Sbjct 31727 GGCGATCAAGGCCGCGGTCGCCGT 31704 >seq62913 Length=7390 Score = 84.2 bits (92), Expect = 7e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 26273 TCGCCCACTGCGAGTCGTCCGGAAACTGGAGCATCAACACCGGCAACGGGTTCTACGGCG 26332 |||| || |||||||| ||| |||||| |||||||||||||||||| | |||||||| Sbjct 7255 TCGCGCAGTGCGAGTCCGGCGGCAACTGGGCCATCAACACCGGCAACGGCTACTACGGCG 7314 Query 26333 GCCTGCAGTTCACGCAGTCCACCTGG 26358 | ||||||||||| | ||||||| Sbjct 7315 GTCTGCAGTTCACCCTCGGCACCTGG 7340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164048683721472