Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq6171 143 3e-29 >seq6171 Length=36435 Score = 143 bits (158), Expect = 3e-29 Identities = 394/598 (66%), Gaps = 13/598 (2%) Strand=Plus/Minus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| ||||||||||| || |||||||| ||||| || || ||||| || |||||| Sbjct 4968 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 4909 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291 ||||| |||||||| || | |||||| | ||||||||| | || ||| ||| || Sbjct 4908 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCTTCCGCTGAA 4850 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348 |||||| |||||||| ||||| || || | || |||||||| |||| Sbjct 4849 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAAC---- 4794 Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408 || ||||| | ||| | ||||| || |||||| || || || || Sbjct 4793 --CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGAT 4736 Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468 ||| || | | | ||||| ||| ||| |||| || | || | || ||||| Sbjct 4735 TGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACT 4676 Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528 ||||| || || || ||||| ||||| || || || || ||||| ||| | || || Sbjct 4675 GTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTC 4616 Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588 || | || || || || | ||||| || | ||| || ||| || || || Sbjct 4615 AGCAACCTGGACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGA 4556 Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648 || ||||| || ||||| |||| | || |||||||||||| | || || |||| Sbjct 4555 GGCGGCAAAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTC 4496 Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708 ||| | | | |||| |||| ||| ||||| || || ||||| ||| ||||| || Sbjct 4495 CCAGTGACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGC 4436 Query 37709 ACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATC 37765 || ||||| |||||| | || || ||||| || | |||| |||| ||| Sbjct 4435 TTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACA-TACAGAATCGATC 4379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591845434290560