Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq6171 143 3e-29
>seq6171
Length=36435
Score = 143 bits (158), Expect = 3e-29
Identities = 394/598 (66%), Gaps = 13/598 (2%)
Strand=Plus/Minus
Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232
||||| ||||||||||| || |||||||| ||||| || || ||||| || ||||||
Sbjct 4968 AAACACGCAAAATCACAGTGCAAACCTTCGTCTCTTGAAATTAACTCATTTGAGAAGGTT 4909
Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAG-ATCCAGAAAA 37291
||||| |||||||| || | |||||| | ||||||||| | || ||| ||| ||
Sbjct 4908 AATCCAGGCATTAACCCCCGTTTTTTCAACCAAAATATCG-AACAGAAGCTTCCGCTGAA 4850
Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT---GAACTATA 37348
|||||| |||||||| ||||| || || | || |||||||| ||||
Sbjct 4849 GAAAATCCCTTCAACACAAGCAAAAGCCACCAAGCGCTCCGCGAAAGTTTCGGAAC---- 4794
Query 37349 ATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAAT 37408
|| ||||| | ||| | ||||| || |||||| || || || ||
Sbjct 4793 --CATCGATCCAACGAAGGGCCCATTTCGCCTTCTTTTCAACACAAGGGATGGTCTCGAT 4736
Query 37409 TGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACT 37468
||| || | | | ||||| ||| ||| |||| || | || | || |||||
Sbjct 4735 TGCACGGAACAATTTGCTCTTTTCGTCAGAATCCTTTATGTACGACTCCAACAGCAAACT 4676
Query 37469 ATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTC 37528
||||| || || || ||||| ||||| || || || || ||||| ||| | || ||
Sbjct 4675 GTACATCTCGGAATGGATATTCTCAATGGCGATTTGGAACCCATAGAAAGCACGCGCCTC 4616
Query 37529 AGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACT 37588
|| | || || || || | ||||| || | ||| || ||| || || ||
Sbjct 4615 AGCAACCTGGACGTCTTTCATGAACCTTCCTGCGAGGTTCTCTAAAACGATGCCGTCTGA 4556
Query 37589 AGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTT 37648
|| ||||| || ||||| |||| | || |||||||||||| | || || ||||
Sbjct 4555 GGCGGCAAAAAAGGCAAGCACATGAGTGATGAAATGTCTTTCACCGGATGTTAGGTTTTC 4496
Query 37649 CCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGCCAATGC 37708
||| | | | |||| |||| ||| ||||| || || ||||| ||| ||||| ||
Sbjct 4495 CCAGTGACGATTATCAGAAGATAGATCGACTTCTTCTACCGTCCAGAAAGATGCCATGGC 4436
Query 37709 ACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACA-AATCTATC 37765
|| ||||| |||||| | || || ||||| || | |||| |||| |||
Sbjct 4435 TTTCTTGTACATTTCCCAAATCTGTGGATACTGAATTGGGAACA-TACAGAATCGATC 4379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 591845434290560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |