Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_018848.1 Length=37612 Score E Sequences producing significant alignments: (Bits) Value seq63545 105 2e-18 >seq63545 Length=90175 Score = 105 bits (116), Expect = 2e-18 Identities = 234/346 (68%), Gaps = 9/346 (3%) Strand=Plus/Minus Query 30170 TGGCCGGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGGT 30229 ||||||| || ||| ||||| || ||||||||| || || ||||| || || | | Sbjct 74095 TGGCCGGCGAAACCGTCATCACGGTGGTGGGCAACCTCACCGCGGACCCGGAGCTGCGCT 74036 Query 30230 TCACCCCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTCG 30289 ||| | ||| |||||| ||||||||| |||| || ||||| |||||||||| Sbjct 74035 ACACGCAGAACGGGCTCGCCGTGGCGAACTTCACCATCGCGTCCACCCCTCGCACGTTCG 73976 Query 30290 ACCGCACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGT--CTCCGTATG 30347 |||| || ||||| ||| |||||||| | ||||||| ||||| ||| || Sbjct 73975 ACCGTCAGGCGAACGAGTGGAAGGACGGCGACGCGCTGTTCC--TCCGTGCGAGCGTGTG 73918 Query 30348 GCGCCAGCAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGACCGCGTGATCGTCGT 30407 |||| || |||||| |||| || || || | ||| |||||| |||| || Sbjct 73917 GCGCGAGTTCGCCGAGCACGTGGCGGGCTCACTGACGAAGGGCTCCCGCGTCATCG-CGC 73859 Query 30408 CGGCAC-CCTCGCCCAGCGCACGTACGAGAA---GGACGGCGAGCGCCGAGCGTCCTACG 30463 || | |||| |||||| | ||| || | || ||| ||| || || | || Sbjct 73858 AGGGTCGCCTCCGTCAGCGCTCCTACCAGGACCGTGAGGGCCAGCAGCGCACGAGCATCG 73799 Query 30464 AGGTCAAGGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGC 30509 || || ||| ||| || |||||||| ||||| |||||||||| Sbjct 73798 AGCTCGAGGTCGACGAGATCGGCCCCTCGCTCCGCTACGCGACCGC 73753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120145899776832