Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq3410 91.5 3e-13 seq924 84.2 5e-11 >seq3410 Length=227636 Score = 91.5 bits (100), Expect = 3e-13 Identities = 242/358 (68%), Gaps = 19/358 (5%) Strand=Plus/Plus Query 150307 AGAAGGTAAACTTGATCCACTAATTGGTCGCGAAACTGAACTT-GATGATCTAATTCAGA 150365 || ||| ||||||||||| | |||||| | || ||| | || || |||||| || Sbjct 222128 AGCAGGAAAACTTGATCCTGTGATTGGTAGGGATGAAGAAATCCGAAGAG-TAATTCGGA 222186 Query 150366 TTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGTAA 150423 | || || | | || || || ||| ||||| ||| ||||||| || ||||||||||| Sbjct 222187 TCCTATCGAGGAGGACAAAGAACAATCCGGTGC-TTA-TTGGTGAGCCTGGTGTTGGTAA 222244 Query 150424 AACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCC-AGATTCTA 150482 |||| | | ||||| || |||||||| | || | | |||||||| || || || Sbjct 222245 AACAGCAGTAGTTGAAGGGCTAGCACAAAGGATTGTTCGAGGTGATGTCCCGAGTAACT- 222303 Query 150483 TGAAAGATGTTGAAATTCTTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTATC 150542 || |||||| || | | ||| ||||||| ||| | |||||| | ||||| Sbjct 222304 TGGCTGATGTTAGGCTTATAGCATTGGATATGGGAGCACTCGTTGCTGGAGCGAAGTACA 222363 Query 150543 GTGGTGAATTCGAAGAACG--TGTAGACAATTTGCTACAAGAACTAAAAGA-----ACGC 150595 | |||||||| ||||| | || || | || || | ||| | |||| ||| Sbjct 222364 GAGGTGAATTTGAAGAGAGGTTGAAGGCTGTT--CTGAAGGAAGTGGAAGATGCAGACGG 222421 Query 150596 GATGATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTG 150653 || | || ||||| ||||||||||| || || || | ||||||||| ||||| Sbjct 222422 GA--AAGTAATTCTCTTCATCGATGAGATACACTTGGTTTTAGGTGCTGGTAGGACTG 222477 >seq924 Length=22087 Score = 84.2 bits (92), Expect = 5e-11 Identities = 64/75 (85%), Gaps = 3/75 (4%) Strand=Plus/Plus Query 324420 GCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGTTCG 324479 ||||||||||||||| |||||||| ||||||||||||||||||||||| | ||||| Sbjct 397 GCGGAGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACG---GGTTCA 453 Query 324480 AATCCCACCTCCGCA 324494 ||||| ||||||| Sbjct 454 AATCCTGTCTCCGCA 468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1146654316248672