Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq63210 143 4e-29 seq63454 95.1 2e-14 >seq63210 Length=11074 Score = 143 bits (158), Expect = 4e-29 Identities = 485/735 (66%), Gaps = 38/735 (5%) Strand=Plus/Minus Query 136648 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 136707 ||||||||| || || ||| || ||||| ||| ||||||||| | || Sbjct 7878 CCCTTCACGTTGACGATCTGCCGCAGCGTGTGCCGGATCGACACGAGGTCGGCGGCGTCC 7819 Query 136708 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCA---CGCCAGCG 136764 |||| ||| |||||| |||||| ||| |||||| ||||||| | || | | | Sbjct 7818 GCCATCACCTGGTCGATCGGCTTGTACGCCGCCGGGATCTCGTCGAGGAACGCGTCGGTG 7759 Query 136765 TCCTTGCGGCACTCCACGCCCTCGGTGGCCTT---GATCTGGTCCTCCAGGGTGAAGGTC 136821 || |||| |||| | ||| | ||||| || || ||| | | ||||| ||| Sbjct 7758 TC---GCGGTACTCGATGCCGACCATGGCCGCCCGGAGCTCGTCGTGC---GTGAACGTC 7705 Query 136822 -GCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGA 136880 ||| || || | |||||| | ||| || || ||||||| |||| || ||| Sbjct 7704 CGCCGTG-CCGCCGACCGCGAGTACAGCCGCCCGGCACCGTGCGGCGACGACTCGAGCGA 7646 Query 136881 GTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGAT 136940 | ||||| ||| |||| ||| ||| || |||||||| |||||||| | Sbjct 7645 CGGCTTGTTGCCGAGGCCCTCGACGACGTACGACGCGGTGCCCATCGACCCGGGGATCAG 7586 Query 136941 CCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTC 137000 ||| ||| || || |||| | ||||||||| |||| ||| | || ||| | Sbjct 7585 GCCGGCCTGCCCCGCCTTCGCCTGGATCGCGCCCTTCCGGGACACCCACACGGACTTCCC 7526 Query 137001 GAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTC-CTTGTCCGTCT 137059 |||| || ||| | |||||||||||||||| | ||| || | | || Sbjct 7525 CCAGTGCGTCTCGCGCTGCGTGAAGTTGTGGTGGCAGTTGA----TTCGCTCGAGCTCCT 7470 Query 137060 TGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAG--GACCCGGACCATCATCATCTC 137117 || |||| | | ||| | ||| || || | ||||||| |||||||| ||| Sbjct 7469 CGACGGGCG-CGTCCATGAC-CTCGCGCAGCTGCCGGACGACCCGGTCCATCATCTCCTC 7412 Query 137118 GCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTT--CCACGTAGTCGTGGAAC 137175 |||||||| ||||||||| ||| |||| || | ||| | | ||| || |||| Sbjct 7411 GCGGTTGAGGAGCGCGAAGTGCTGCGCCCAC-CG-CAGCTCGGCGATGTACCGGTCGAAC 7354 Query 137176 TCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGA 137235 || ||| ||| ||| ||| | || ||||| |||| || ||| | || ||| Sbjct 7353 TCGGGCGTGCCCTCGACGAGGTACGCCAGGTCGGGGTCCGGCAGCTCGATCCAC-CAC-- 7297 Query 137236 CGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGC-GGCCGATGGTGTTGCCGACGCC 137294 ||| |||| || ||| || || |||| | || || |||| ||||||||||||| Sbjct 7296 CGCTCCATCGCCTTCTTCGCGATCGTGATGT-GCCGCTGGGCGATCTTGTTGCCGACGCC 7238 Query 137295 GCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCT---CGTCGAGGCAGACCTC 137351 ||| || || ||||| || | || |||||| |||||||| |||||||| ||||||| Sbjct 7237 GCGTGACCCGGAGTGCAGGAACAGCCAGAC---CTGGTCCTGCTCGTCGAGGGAGACCTC 7181 Query 137352 GATGAAGTGGTTGCC 137366 ||||||||||||||| Sbjct 7180 GATGAAGTGGTTGCC 7166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 137607 GGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGC 137666 ||| |||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 6952 GGTCCGGACCGCGATCATGCCGCAGCCGATGTCCACGCCGACGGCCGCCGGCATGATCGC 6893 Query 137667 GCC 137669 ||| Sbjct 6892 GCC 6890 >seq63454 Length=19053 Score = 95.1 bits (104), Expect = 2e-14 Identities = 165/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 54271 CTGGGCTTCCTGCCCGGCAAGCTGGAAGCCAAACTCGCCCCGTGGCTCGTCCCGGTGATC 54330 || || ||||||||||||| |||| | ||| ||| ||||| ||| |||| | | Sbjct 7298 CTCGGGTTCCTGCCCGGCACGCTGACGGACAAGATCGACCCGTACCTCCGCCCGCTCTAC 7357 Query 54331 GAGGGCGTCAAGGCCGAGATGAACG-CCCAGACCTACACCC--AGTTGCAGGAAGCCGGC 54387 || | |||| |||||||| | ||| || || ||| || | | || |||||| Sbjct 7358 GACGCGCTCAA---CGAGATGATGGACCCCGAGCTGGTCCCGAAGCTCCTGGCCGCCGGC 7414 Query 54388 AAGATCGAGTTCGCCTCGTTCGAGCATATGCGGGGCCGGACCTTCGCCGAGTGCTGCGTC 54447 | | ||||| ||||| || | | | | ||||| |||||||| | ||| | | |||| Sbjct 7415 ACGGTCGAGGTCGCCCCGCTGGCGTACATGCGCGGCCGGACGCTGAACGACTCGTTCGTC 7474 Query 54448 CTCCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTGAAGATGGTCCTGACCCGC 54504 |||||||||||||||||||| || | || | |||||||| ||||||| ||| Sbjct 7475 GTCCTCGACGAGGCGCAGAACACCACGCCCGAGCAGATGAAGATGTTCCTGACGCGC 7531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689594783404800