Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21] 63,664 sequences; 729,602,650 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq63210 131 2e-25 seq63454 98.7 1e-15 >seq63210 Length=11074 Score = 131 bits (144), Expect = 2e-25 Identities = 479/734 (65%), Gaps = 36/734 (5%) Strand=Plus/Minus Query 135408 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 135467 ||||||||| || || ||| || ||||| ||| ||||||||| | || Sbjct 7878 CCCTTCACGTTGACGATCTGCCGCAGCGTGTGCCGGATCGACACGAGGTCGGCGGCGTCC 7819 Query 135468 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCA---CGCCAGCG 135524 |||| ||| |||||| |||||| ||| |||||| ||||||| | || | | | Sbjct 7818 GCCATCACCTGGTCGATCGGCTTGTACGCCGCCGGGATCTCGTCGAGGAACGCGTCGGTG 7759 Query 135525 TCCTTACGGCACTCCACGCCCTCGGTGGCCTT---GATCTGGTCCTCCAGGGTGAAGGTC 135581 || ||| |||| | ||| | ||||| || || ||| | | ||||| ||| Sbjct 7758 TCG---CGGTACTCGATGCCGACCATGGCCGCCCGGAGCTCGTCGTGC---GTGAACGTC 7705 Query 135582 -GCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGA 135640 ||| || || | |||||| | ||| || || ||||||| |||| || ||| Sbjct 7704 CGCCGTG-CCGCCGACCGCGAGTACAGCCGCCCGGCACCGTGCGGCGACGACTCGAGCGA 7646 Query 135641 GTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGAT 135700 | ||||| ||| |||| ||| ||| || |||||||| |||||||| | Sbjct 7645 CGGCTTGTTGCCGAGGCCCTCGACGACGTACGACGCGGTGCCCATCGACCCGGGGATCAG 7586 Query 135701 CCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTC 135760 ||| ||| || || |||| | ||||||||| |||| ||| | || ||| | Sbjct 7585 GCCGGCCTGCCCCGCCTTCGCCTGGATCGCGCCCTTCCGGGACACCCACACGGACTTCCC 7526 Query 135761 GAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTC-CTTGTCCGTCT 135819 |||| || ||| | |||||||||||||||| | ||| || | | || Sbjct 7525 CCAGTGCGTCTCGCGCTGCGTGAAGTTGTGGTGGCAGTTGA----TTCGCTCGAGCTCCT 7470 Query 135820 TGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAG--GACCCGGACCATCATCATCTC 135877 || |||| | | ||| | ||| || || | ||||||| |||||||| ||| Sbjct 7469 CGACGGGCG-CGTCCATGAC-CTCGCGCAGCTGCCGGACGACCCGGTCCATCATCTCCTC 7412 Query 135878 GCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTT--CCACGTAGTCGTGGAAC 135935 |||||||| ||||||||| ||| |||| || | ||| | | ||| || |||| Sbjct 7411 GCGGTTGAGGAGCGCGAAGTGCTGCGCCCAC-CG-CAGCTCGGCGATGTACCGGTCGAAC 7354 Query 135936 TCCGGTTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGC 135995 || || ||| ||| ||| | || ||||| |||| || ||| | || | | Sbjct 7353 TCGGGCGTGCCCTCGACGAGGTACGCCAGGTCGGGGTCCGGCAGCTCGATCCAC---CAC 7297 Query 135996 CGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCG 136055 ||| |||| || ||| || || |||| || |||| |||||||||||||| Sbjct 7296 CGCTCCATCGCCTTCTTCGCGATCGTGATGTGCCGCTGGGCGATCTTGTTGCCGACGCCG 7237 Query 136056 CGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCT---CGTCGAGGCAGACCTCG 136112 || || || ||||| || | || |||||| |||||||| |||||||| |||||||| Sbjct 7236 CGTGACCCGGAGTGCAGGAACAGCCAGAC---CTGGTCCTGCTCGTCGAGGGAGACCTCG 7180 Query 136113 ATGAAGTGGTTGCC 136126 |||||||||||||| Sbjct 7179 ATGAAGTGGTTGCC 7166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 136367 GGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGC 136426 ||| |||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 6952 GGTCCGGACCGCGATCATGCCGCAGCCGATGTCCACGCCGACGGCCGCCGGCATGATCGC 6893 Query 136427 GCC 136429 ||| Sbjct 6892 GCC 6890 >seq63454 Length=19053 Score = 98.7 bits (108), Expect = 1e-15 Identities = 165/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 53013 CTGGGCTTCCTGCCCGGCAAGCTGGAAGCCAAGCTCGCCCCGTGGCTCGTCCCGGTGATC 53072 || || ||||||||||||| |||| | |||| ||| ||||| ||| |||| | | Sbjct 7298 CTCGGGTTCCTGCCCGGCACGCTGACGGACAAGATCGACCCGTACCTCCGCCCGCTCTAC 7357 Query 53073 GAGGGCGTCAAGGCCGAGATGAACG-CCCAGACCTA--CACGCAGTTGCAGGAGGCCGGC 53129 || | |||| |||||||| | ||| || || | || || | | || |||||| Sbjct 7358 GACGCGCTCAA---CGAGATGATGGACCCCGAGCTGGTCCCGAAGCTCCTGGCCGCCGGC 7414 Query 53130 AAGATCGAGTTCGCCTCGTTCGAGCACATGCGGGGCCGGACCTTCGCCGAGTGCTGCGTC 53189 | | ||||| ||||| || | | | ||||||| |||||||| | ||| | | |||| Sbjct 7415 ACGGTCGAGGTCGCCCCGCTGGCGTACATGCGCGGCCGGACGCTGAACGACTCGTTCGTC 7474 Query 53190 CTCCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTAAAGATGGTCCTGACCCG 53245 |||||||||||||||||||| || | || | | |||||| ||||||| || Sbjct 7475 GTCCTCGACGAGGCGCAGAACACCACGCCCGAGCAGATGAAGATGTTCCTGACGCG 7530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 699887386028160