Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Solanum_20commersonii_20[genbank_20GCA_5F001239805.1_202015-04-21]
63,664 sequences; 729,602,650 total letters
Query= NC_019407.1
Length=218929
Score E
Sequences producing significant alignments: (Bits) Value
seq63210 131 2e-25
seq63454 98.7 1e-15
>seq63210
Length=11074
Score = 131 bits (144), Expect = 2e-25
Identities = 479/734 (65%), Gaps = 36/734 (5%)
Strand=Plus/Minus
Query 135408 CCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGGCC 135467
||||||||| || || ||| || ||||| ||| ||||||||| | ||
Sbjct 7878 CCCTTCACGTTGACGATCTGCCGCAGCGTGTGCCGGATCGACACGAGGTCGGCGGCGTCC 7819
Query 135468 TCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCA---CGCCAGCG 135524
|||| ||| |||||| |||||| ||| |||||| ||||||| | || | | |
Sbjct 7818 GCCATCACCTGGTCGATCGGCTTGTACGCCGCCGGGATCTCGTCGAGGAACGCGTCGGTG 7759
Query 135525 TCCTTACGGCACTCCACGCCCTCGGTGGCCTT---GATCTGGTCCTCCAGGGTGAAGGTC 135581
|| ||| |||| | ||| | ||||| || || ||| | | ||||| |||
Sbjct 7758 TCG---CGGTACTCGATGCCGACCATGGCCGCCCGGAGCTCGTCGTGC---GTGAACGTC 7705
Query 135582 -GCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGA 135640
||| || || | |||||| | ||| || || ||||||| |||| || |||
Sbjct 7704 CGCCGTG-CCGCCGACCGCGAGTACAGCCGCCCGGCACCGTGCGGCGACGACTCGAGCGA 7646
Query 135641 GTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGAT 135700
| ||||| ||| |||| ||| ||| || |||||||| |||||||| |
Sbjct 7645 CGGCTTGTTGCCGAGGCCCTCGACGACGTACGACGCGGTGCCCATCGACCCGGGGATCAG 7586
Query 135701 CCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTC 135760
||| ||| || || |||| | ||||||||| |||| ||| | || ||| |
Sbjct 7585 GCCGGCCTGCCCCGCCTTCGCCTGGATCGCGCCCTTCCGGGACACCCACACGGACTTCCC 7526
Query 135761 GAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTC-CTTGTCCGTCT 135819
|||| || ||| | |||||||||||||||| | ||| || | | ||
Sbjct 7525 CCAGTGCGTCTCGCGCTGCGTGAAGTTGTGGTGGCAGTTGA----TTCGCTCGAGCTCCT 7470
Query 135820 TGAACGGCGGCAGGCCCGACGCCCGCATGGCCTCCAG--GACCCGGACCATCATCATCTC 135877
|| |||| | | ||| | ||| || || | ||||||| |||||||| |||
Sbjct 7469 CGACGGGCG-CGTCCATGAC-CTCGCGCAGCTGCCGGACGACCCGGTCCATCATCTCCTC 7412
Query 135878 GCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTT--CCACGTAGTCGTGGAAC 135935
|||||||| ||||||||| ||| |||| || | ||| | | ||| || ||||
Sbjct 7411 GCGGTTGAGGAGCGCGAAGTGCTGCGCCCAC-CG-CAGCTCGGCGATGTACCGGTCGAAC 7354
Query 135936 TCCGGTTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGC 135995
|| || ||| ||| ||| | || ||||| |||| || ||| | || | |
Sbjct 7353 TCGGGCGTGCCCTCGACGAGGTACGCCAGGTCGGGGTCCGGCAGCTCGATCCAC---CAC 7297
Query 135996 CGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCG 136055
||| |||| || ||| || || |||| || |||| ||||||||||||||
Sbjct 7296 CGCTCCATCGCCTTCTTCGCGATCGTGATGTGCCGCTGGGCGATCTTGTTGCCGACGCCG 7237
Query 136056 CGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCT---CGTCGAGGCAGACCTCG 136112
|| || || ||||| || | || |||||| |||||||| |||||||| ||||||||
Sbjct 7236 CGTGACCCGGAGTGCAGGAACAGCCAGAC---CTGGTCCTGCTCGTCGAGGGAGACCTCG 7180
Query 136113 ATGAAGTGGTTGCC 136126
||||||||||||||
Sbjct 7179 ATGAAGTGGTTGCC 7166
Score = 91.5 bits (100), Expect = 2e-13
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 136367 GGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGACGGCGGCCGGGATGATCGC 136426
||| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||||||||
Sbjct 6952 GGTCCGGACCGCGATCATGCCGCAGCCGATGTCCACGCCGACGGCCGCCGGCATGATCGC 6893
Query 136427 GCC 136429
|||
Sbjct 6892 GCC 6890
>seq63454
Length=19053
Score = 98.7 bits (108), Expect = 1e-15
Identities = 165/236 (70%), Gaps = 6/236 (3%)
Strand=Plus/Plus
Query 53013 CTGGGCTTCCTGCCCGGCAAGCTGGAAGCCAAGCTCGCCCCGTGGCTCGTCCCGGTGATC 53072
|| || ||||||||||||| |||| | |||| ||| ||||| ||| |||| | |
Sbjct 7298 CTCGGGTTCCTGCCCGGCACGCTGACGGACAAGATCGACCCGTACCTCCGCCCGCTCTAC 7357
Query 53073 GAGGGCGTCAAGGCCGAGATGAACG-CCCAGACCTA--CACGCAGTTGCAGGAGGCCGGC 53129
|| | |||| |||||||| | ||| || || | || || | | || ||||||
Sbjct 7358 GACGCGCTCAA---CGAGATGATGGACCCCGAGCTGGTCCCGAAGCTCCTGGCCGCCGGC 7414
Query 53130 AAGATCGAGTTCGCCTCGTTCGAGCACATGCGGGGCCGGACCTTCGCCGAGTGCTGCGTC 53189
| | ||||| ||||| || | | | ||||||| |||||||| | ||| | | ||||
Sbjct 7415 ACGGTCGAGGTCGCCCCGCTGGCGTACATGCGCGGCCGGACGCTGAACGACTCGTTCGTC 7474
Query 53190 CTCCTCGACGAGGCGCAGAACGCCGACTACAAGGACCTAAAGATGGTCCTGACCCG 53245
|||||||||||||||||||| || | || | | |||||| ||||||| ||
Sbjct 7475 GTCCTCGACGAGGCGCAGAACACCACGCCCGAGCAGATGAAGATGTTCCTGACGCG 7530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 699887386028160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |